pymzML—Python module for high-throughput bioinformatics on mass spectrometry data

pymzML is an extension to Python that offers (i) an easy access to mass spectrometry (MS) data that allows the rapid development of tools, (ii) a very fast parser for mzML data, the standard data format in MS and (iii) a set of functions to compare or handle spectra. Availability and implementation:...

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Veröffentlicht in:Bioinformatics (Oxford, England) Jg. 28; H. 7; S. 1052 - 1053
Hauptverfasser: Bald, Till, Barth, Johannes, Niehues, Anna, Specht, Michael, Hippler, Michael, Fufezan, Christian
Format: Journal Article
Sprache:Englisch
Veröffentlicht: Oxford Oxford University Press 01.04.2012
Schlagworte:
Biological and medical sciences
Computational Biology - methods
Fundamental and applied biological sciences. Psychology
General aspects
Mass Spectrometry
Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects)
Programming Languages
Software
High throughput screening
Data
Module
Bioinformatics
Mass spectrometry
ISSN:1367-4803, 1367-4811, 1367-4811
Online-Zugang:Volltext
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Zusammenfassung:pymzML is an extension to Python that offers (i) an easy access to mass spectrometry (MS) data that allows the rapid development of tools, (ii) a very fast parser for mzML data, the standard data format in MS and (iii) a set of functions to compare or handle spectra. Availability and implementation: pymzML requires Python2.6.5+ and is fully compatible with Python3. The module is freely available on http://pymzml.github.com or pypi, is published under LGPL license and requires no additional modules to be installed. Contact:  christian@fufezan.net
Bibliographie:ObjectType-Article-1
SourceType-Scholarly Journals-1
ObjectType-Feature-2
content type line 23
ISSN:1367-4803
1367-4811
1367-4811
DOI:10.1093/bioinformatics/bts066