pymzML—Python module for high-throughput bioinformatics on mass spectrometry data

pymzML is an extension to Python that offers (i) an easy access to mass spectrometry (MS) data that allows the rapid development of tools, (ii) a very fast parser for mzML data, the standard data format in MS and (iii) a set of functions to compare or handle spectra. Availability and implementation:...

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Podrobná bibliografie
Vydáno v:	Bioinformatics (Oxford, England) Ročník 28; číslo 7; s. 1052 - 1053
Hlavní autoři:	Bald, Till, Barth, Johannes, Niehues, Anna, Specht, Michael, Hippler, Michael, Fufezan, Christian
Médium:	Journal Article
Jazyk:	angličtina
Vydáno:	Oxford Oxford University Press 01.04.2012
Témata:	Biological and medical sciences Computational Biology - methods Fundamental and applied biological sciences. Psychology General aspects Mass Spectrometry Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects) Programming Languages Software High throughput screening Data Module Bioinformatics Mass spectrometry
ISSN:	1367-4803, 1367-4811, 1367-4811
On-line přístup:	Získat plný text
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Popis
Shrnutí:	pymzML is an extension to Python that offers (i) an easy access to mass spectrometry (MS) data that allows the rapid development of tools, (ii) a very fast parser for mzML data, the standard data format in MS and (iii) a set of functions to compare or handle spectra. Availability and implementation: pymzML requires Python2.6.5+ and is fully compatible with Python3. The module is freely available on http://pymzml.github.com or pypi, is published under LGPL license and requires no additional modules to be installed. Contact: christian@fufezan.net
Bibliografie:	ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23
ISSN:	1367-4803 1367-4811 1367-4811
DOI:	10.1093/bioinformatics/bts066