Impact of the Chromatin Remodeling Factor CHD1 on Gut Microbiome Composition of Drosophila melanogaster
The composition of the intestinal microbiota of Drosophila has been studied in some detail in recent years. Environmental, developmental and host-specific genetic factors influence microbiome composition in the fly. Our previous work has indicated that intestinal bacterial load can be affected by ch...
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| Vydáno v: | PloS one Ročník 11; číslo 4; s. e0153476 |
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| Hlavní autoři: | , , , , , , |
| Médium: | Journal Article |
| Jazyk: | angličtina |
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Public Library of Science
19.04.2016
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| ISSN: | 1932-6203, 1932-6203 |
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| Abstract | The composition of the intestinal microbiota of Drosophila has been studied in some detail in recent years. Environmental, developmental and host-specific genetic factors influence microbiome composition in the fly. Our previous work has indicated that intestinal bacterial load can be affected by chromatin-targeted regulatory mechanisms. Here we studied a potential role of the conserved chromatin assembly and remodeling factor CHD1 in the shaping of the gut microbiome in Drosophila melanogaster. Using high-throughput sequencing of 16S rRNA gene amplicons, we found that Chd1 deletion mutant flies exhibit significantly reduced microbial diversity compared to rescued control strains. Specifically, although Acetobacteraceae dominated the microbiota of both Chd1 wild-type and mutant guts, Chd1 mutants were virtually monoassociated with this bacterial family, whereas in control flies other bacterial taxa constituted ~20% of the microbiome. We further show age-linked differences in microbial load and microbiota composition between Chd1 mutant and control flies. Finally, diet supplementation experiments with Lactobacillus plantarum revealed that, in contrast to wild-type flies, Chd1 mutant flies were unable to maintain higher L. plantarum titres over time. Collectively, these data provide evidence that loss of the chromatin remodeler CHD1 has a major impact on the gut microbiome of Drosophila melanogaster. |
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| AbstractList | The composition of the intestinal microbiota of Drosophila has been studied in some detail in recent years. Environmental, developmental and host-specific genetic factors influence microbiome composition in the fly. Our previous work has indicated that intestinal bacterial load can be affected by chromatin-targeted regulatory mechanisms. Here we studied a potential role of the conserved chromatin assembly and remodeling factor CHD1 in the shaping of the gut microbiome in Drosophila melanogaster . Using high-throughput sequencing of 16S rRNA gene amplicons, we found that Chd1 deletion mutant flies exhibit significantly reduced microbial diversity compared to rescued control strains. Specifically, although Acetobacteraceae dominated the microbiota of both Chd1 wild-type and mutant guts, Chd1 mutants were virtually monoassociated with this bacterial family, whereas in control flies other bacterial taxa constituted ~20% of the microbiome. We further show age-linked differences in microbial load and microbiota composition between Chd1 mutant and control flies. Finally, diet supplementation experiments with Lactobacillus plantarum revealed that, in contrast to wild-type flies, Chd1 mutant flies were unable to maintain higher L . plantarum titres over time. Collectively, these data provide evidence that loss of the chromatin remodeler CHD1 has a major impact on the gut microbiome of Drosophila melanogaster . The composition of the intestinal microbiota of Drosophila has been studied in some detail in recent years. Environmental, developmental and host-specific genetic factors influence microbiome composition in the fly. Our previous work has indicated that intestinal bacterial load can be affected by chromatin-targeted regulatory mechanisms. Here we studied a potential role of the conserved chromatin assembly and remodeling factor CHD1 in the shaping of the gut microbiome in Drosophila melanogaster. Using high-throughput sequencing of 16S rRNA gene amplicons, we found that Chd1 deletion mutant flies exhibit significantly reduced microbial diversity compared to rescued control strains. Specifically, although Acetobacteraceae dominated the microbiota of both Chd1 wild-type and mutant guts, Chd1 mutants were virtually monoassociated with this bacterial family, whereas in control flies other bacterial taxa constituted ~20% of the microbiome. We further show age-linked differences in microbial load and microbiota composition between Chd1 mutant and control flies. Finally, diet supplementation experiments with Lactobacillus plantarum revealed that, in contrast to wild-type flies, Chd1 mutant flies were unable to maintain higher L. plantarum titres over time. Collectively, these data provide evidence that loss of the chromatin remodeler CHD1 has a major impact on the gut microbiome of Drosophila melanogaster.The composition of the intestinal microbiota of Drosophila has been studied in some detail in recent years. Environmental, developmental and host-specific genetic factors influence microbiome composition in the fly. Our previous work has indicated that intestinal bacterial load can be affected by chromatin-targeted regulatory mechanisms. Here we studied a potential role of the conserved chromatin assembly and remodeling factor CHD1 in the shaping of the gut microbiome in Drosophila melanogaster. Using high-throughput sequencing of 16S rRNA gene amplicons, we found that Chd1 deletion mutant flies exhibit significantly reduced microbial diversity compared to rescued control strains. Specifically, although Acetobacteraceae dominated the microbiota of both Chd1 wild-type and mutant guts, Chd1 mutants were virtually monoassociated with this bacterial family, whereas in control flies other bacterial taxa constituted ~20% of the microbiome. We further show age-linked differences in microbial load and microbiota composition between Chd1 mutant and control flies. Finally, diet supplementation experiments with Lactobacillus plantarum revealed that, in contrast to wild-type flies, Chd1 mutant flies were unable to maintain higher L. plantarum titres over time. Collectively, these data provide evidence that loss of the chromatin remodeler CHD1 has a major impact on the gut microbiome of Drosophila melanogaster. |
| Audience | Academic |
| Author | Schoberleitner, Ines Krogsdam, Anne Orth-Höller, Dorothea Lusser, Alexandra Sebald, Johanna Trajanoski, Zlatko Willi, Michaela |
| AuthorAffiliation | 4 Division of Hygiene and Medical Microbiology, Medical University of Innsbruck, Innsbruck, Austria 2 Division of Bioinformatics, Biocenter, Medical University of Innsbruck, Innsbruck, Austria 3 I-Med GenomeSeq Core, Biocenter, Medical University of Innsbruck, Innsbruck, Austria 1 Division of Molecular Biology, Biocenter, Medical University of Innsbruck, Innsbruck, Austria Oxford Brookes University, UNITED KINGDOM |
| AuthorAffiliation_xml | – name: 2 Division of Bioinformatics, Biocenter, Medical University of Innsbruck, Innsbruck, Austria – name: 4 Division of Hygiene and Medical Microbiology, Medical University of Innsbruck, Innsbruck, Austria – name: 1 Division of Molecular Biology, Biocenter, Medical University of Innsbruck, Innsbruck, Austria – name: 3 I-Med GenomeSeq Core, Biocenter, Medical University of Innsbruck, Innsbruck, Austria – name: Oxford Brookes University, UNITED KINGDOM |
| Author_xml | – sequence: 1 givenname: Johanna surname: Sebald fullname: Sebald, Johanna – sequence: 2 givenname: Michaela surname: Willi fullname: Willi, Michaela – sequence: 3 givenname: Ines surname: Schoberleitner fullname: Schoberleitner, Ines – sequence: 4 givenname: Anne surname: Krogsdam fullname: Krogsdam, Anne – sequence: 5 givenname: Dorothea surname: Orth-Höller fullname: Orth-Höller, Dorothea – sequence: 6 givenname: Zlatko surname: Trajanoski fullname: Trajanoski, Zlatko – sequence: 7 givenname: Alexandra surname: Lusser fullname: Lusser, Alexandra |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/27093431$$D View this record in MEDLINE/PubMed |
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| CitedBy_id | crossref_primary_10_1146_annurev_genet_112618_043650 crossref_primary_10_1016_j_molmet_2019_12_005 crossref_primary_10_1155_2016_6951091 crossref_primary_10_1016_j_chom_2019_02_003 crossref_primary_10_1016_j_tim_2024_05_006 crossref_primary_10_1038_s41684_018_0065_0 crossref_primary_10_3389_fmicb_2017_00738 crossref_primary_10_3389_fnmol_2022_840966 crossref_primary_10_1186_s12263_019_0641_y crossref_primary_10_1073_pnas_1913976117 |
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| Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 14 content type line 23 Conceived and designed the experiments: JS AK IS AL. Performed the experiments: JS MW IS AK. Analyzed the data: JS MW IS AK ZT AL. Contributed reagents/materials/analysis tools: DOH. Wrote the paper: JS MW IS AK AL. Competing Interests: The authors have declared that no competing interests exist. |
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| Title | Impact of the Chromatin Remodeling Factor CHD1 on Gut Microbiome Composition of Drosophila melanogaster |
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