Displacement of the Predominant Dengue Virus from Type 2 to Type 1 with a Subsequent Genotype Shift from IV to I in Surabaya, Indonesia 2008–2010

Indonesia has annually experienced approximately 100,000 reported cases of dengue fever (DF) and dengue hemorrhagic fever (DHF) in recent years. However, epidemiological surveys of dengue viruses (DENVs) have been limited in this country. In Surabaya, the second largest city, a single report indicat...

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Veröffentlicht in:	PloS one Jg. 6; H. 11; S. e27322
Hauptverfasser:	Yamanaka, Atsushi, Mulyatno, Kris C., Susilowati, Helen, Hendrianto, Eryk, Ginting, Amor P., Sary, Dian D., Rantam, Fedik A., Soegijanto, Soegeng, Konishi, Eiji
Format:	Journal Article
Sprache:	Englisch
Veröffentlicht:	United States Public Library of Science 07.11.2011 Public Library of Science (PLoS)
Schlagworte:	Analysis Animals Aquatic insects Base Sequence Biology Culicidae - virology Data Collection Dengue - epidemiology Dengue - virology Dengue fever Dengue hemorrhagic fever Dengue virus Dengue Virus - genetics Dengue Virus - isolation & purification Env gene Epidemics Epidemiology Fever Gene sequencing Genetic aspects Genotype Hemorrhagic fevers Humans Indonesia - epidemiology Medical schools Medicine Mosquitoes Phylogeny Polls & surveys Polymerase Chain Reaction Severe Dengue - epidemiology Severe Dengue - virology Studies Surveys Tropical diseases Vector-borne diseases Viral diseases Viruses Indonesia Surabaya Indonesia Thailand Japan Bangkok Thailand
ISSN:	1932-6203, 1932-6203
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Abstract	Indonesia has annually experienced approximately 100,000 reported cases of dengue fever (DF) and dengue hemorrhagic fever (DHF) in recent years. However, epidemiological surveys of dengue viruses (DENVs) have been limited in this country. In Surabaya, the second largest city, a single report indicated that dengue virus type 2 (DENV2) was the predominant circulating virus in 2003-2005. We conducted three surveys in Surabaya during: (i) April 2007, (ii) June 2008 to April 2009, and (iii) September 2009 to December 2010. A total of 231 isolates were obtained from dengue patients and examined by PCR typing. We found that the predominant DENV shifted from type 2 to type 1 between October and November 2008. Another survey using wild-caught mosquitoes in April 2009 confirmed that dengue type 1 virus (DENV1) was the predominant type in Surabaya. Phylogenetic analyses of the nucleotide sequences of the complete envelope gene of DENV1 indicated that all 22 selected isolates in the second survey belonged to genotype IV and all 17 selected isolates in the third survey belonged to genotype I, indicating a genotype shift between April and September 2009. Furthermore, in December 2010, isolates were grouped into a new clade of DENV1 genotype I, suggesting clade shift between September and December 2010. According to statistics reported by the Surabaya Health Office, the proportion of DHF cases among the total number of dengue cases increased about three times after the type shift in 2008. In addition, the subsequent genotype shift in 2009 was associated with the increased number of total dengue cases. This indicates the need for continuous surveillance of circulating viruses to predict the risk of DHF and DF.
AbstractList	Indonesia has annually experienced approximately 100,000 reported cases of dengue fever (DF) and dengue hemorrhagic fever (DHF) in recent years. However, epidemiological surveys of dengue viruses (DENVs) have been limited in this country. In Surabaya, the second largest city, a single report indicated that dengue virus type 2 (DENV2) was the predominant circulating virus in 2003-2005. We conducted three surveys in Surabaya during: (i) April 2007, (ii) June 2008 to April 2009, and (iii) September 2009 to December 2010. A total of 231 isolates were obtained from dengue patients and examined by PCR typing. We found that the predominant DENV shifted from type 2 to type 1 between October and November 2008. Another survey using wild-caught mosquitoes in April 2009 confirmed that dengue type 1 virus (DENV1) was the predominant type in Surabaya. Phylogenetic analyses of the nucleotide sequences of the complete envelope gene of DENV1 indicated that all 22 selected isolates in the second survey belonged to genotype IV and all 17 selected isolates in the third survey belonged to genotype I, indicating a genotype shift between April and September 2009. Furthermore, in December 2010, isolates were grouped into a new clade of DENV1 genotype I, suggesting clade shift between September and December 2010. According to statistics reported by the Surabaya Health Office, the proportion of DHF cases among the total number of dengue cases increased about three times after the type shift in 2008. In addition, the subsequent genotype shift in 2009 was associated with the increased number of total dengue cases. This indicates the need for continuous surveillance of circulating viruses to predict the risk of DHF and DF. Indonesia has annually experienced approximately 100,000 reported cases of dengue fever (DF) and dengue hemorrhagic fever (DHF) in recent years. However, epidemiological surveys of dengue viruses (DENVs) have been limited in this country. In Surabaya, the second largest city, a single report indicated that dengue virus type 2 (DENV2) was the predominant circulating virus in 2003-2005. We conducted three surveys in Surabaya during: (i) April 2007, (ii) June 2008 to April 2009, and (iii) September 2009 to December 2010. A total of 231 isolates were obtained from dengue patients and examined by PCR typing. We found that the predominant DENV shifted from type 2 to type 1 between October and November 2008. Another survey using wild-caught mosquitoes in April 2009 confirmed that dengue type 1 virus (DENV1) was the predominant type in Surabaya. Phylogenetic analyses of the nucleotide sequences of the complete envelope gene of DENV1 indicated that all 22 selected isolates in the second survey belonged to genotype IV and all 17 selected isolates in the third survey belonged to genotype I, indicating a genotype shift between April and September 2009. Furthermore, in December 2010, isolates were grouped into a new clade of DENV1 genotype I, suggesting clade shift between September and December 2010. According to statistics reported by the Surabaya Health Office, the proportion of DHF cases among the total number of dengue cases increased about three times after the type shift in 2008. In addition, the subsequent genotype shift in 2009 was associated with the increased number of total dengue cases. This indicates the need for continuous surveillance of circulating viruses to predict the risk of DHF and DF.Indonesia has annually experienced approximately 100,000 reported cases of dengue fever (DF) and dengue hemorrhagic fever (DHF) in recent years. However, epidemiological surveys of dengue viruses (DENVs) have been limited in this country. In Surabaya, the second largest city, a single report indicated that dengue virus type 2 (DENV2) was the predominant circulating virus in 2003-2005. We conducted three surveys in Surabaya during: (i) April 2007, (ii) June 2008 to April 2009, and (iii) September 2009 to December 2010. A total of 231 isolates were obtained from dengue patients and examined by PCR typing. We found that the predominant DENV shifted from type 2 to type 1 between October and November 2008. Another survey using wild-caught mosquitoes in April 2009 confirmed that dengue type 1 virus (DENV1) was the predominant type in Surabaya. Phylogenetic analyses of the nucleotide sequences of the complete envelope gene of DENV1 indicated that all 22 selected isolates in the second survey belonged to genotype IV and all 17 selected isolates in the third survey belonged to genotype I, indicating a genotype shift between April and September 2009. Furthermore, in December 2010, isolates were grouped into a new clade of DENV1 genotype I, suggesting clade shift between September and December 2010. According to statistics reported by the Surabaya Health Office, the proportion of DHF cases among the total number of dengue cases increased about three times after the type shift in 2008. In addition, the subsequent genotype shift in 2009 was associated with the increased number of total dengue cases. This indicates the need for continuous surveillance of circulating viruses to predict the risk of DHF and DF.
Audience	Academic
Author	Sary, Dian D. Rantam, Fedik A. Konishi, Eiji Mulyatno, Kris C. Soegijanto, Soegeng Hendrianto, Eryk Ginting, Amor P. Yamanaka, Atsushi Susilowati, Helen
AuthorAffiliation	Blood Systems Research Institute, United States of America 2 Center for Infectious Diseases, Kobe University Graduate School of Medicine, Kobe, Japan 4 BIKEN Endowed Department of Dengue Vaccine Development, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand 3 Department of International Health, Kobe University Graduate School of Health Sciences, Kobe, Japan 1 Indonesia–Japan Collaborative Research Center for Emerging and Re-emerging Infectious Diseases, Institute of Tropical Disease, Airlangga University, Surabaya, Indonesia
AuthorAffiliation_xml	– name: 4 BIKEN Endowed Department of Dengue Vaccine Development, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand – name: 3 Department of International Health, Kobe University Graduate School of Health Sciences, Kobe, Japan – name: 1 Indonesia–Japan Collaborative Research Center for Emerging and Re-emerging Infectious Diseases, Institute of Tropical Disease, Airlangga University, Surabaya, Indonesia – name: 2 Center for Infectious Diseases, Kobe University Graduate School of Medicine, Kobe, Japan – name: Blood Systems Research Institute, United States of America
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BackLink	https://www.ncbi.nlm.nih.gov/pubmed/22087290$$D View this record in MEDLINE/PubMed
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Copyright	COPYRIGHT 2011 Public Library of Science 2011 Yamanaka et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License: https://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. Yamanaka et al. 2011
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Notes	ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 14 content type line 23 Conceived and designed the experiments: AY EK. Performed the experiments: AY KCM HS EH. Analyzed the data: AY EK. Contributed reagents/materials/analysis tools: APG DDS FAR SS. Wrote the paper: AY EK.
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Snippet	Indonesia has annually experienced approximately 100,000 reported cases of dengue fever (DF) and dengue hemorrhagic fever (DHF) in recent years. However,...
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SubjectTerms	Analysis Animals Aquatic insects Base Sequence Biology Culicidae - virology Data Collection Dengue - epidemiology Dengue - virology Dengue fever Dengue hemorrhagic fever Dengue virus Dengue Virus - genetics Dengue Virus - isolation & purification Env gene Epidemics Epidemiology Fever Gene sequencing Genetic aspects Genotype Hemorrhagic fevers Humans Indonesia - epidemiology Medical schools Medicine Mosquitoes Phylogeny Polls & surveys Polymerase Chain Reaction Severe Dengue - epidemiology Severe Dengue - virology Studies Surveys Tropical diseases Vector-borne diseases Viral diseases Viruses
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Title	Displacement of the Predominant Dengue Virus from Type 2 to Type 1 with a Subsequent Genotype Shift from IV to I in Surabaya, Indonesia 2008–2010
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