jvenn: an interactive Venn diagram viewer

Background Venn diagrams are commonly used to display list comparison. In biology, they are widely used to show the differences between gene lists originating from different differential analyses, for instance. They thus allow the comparison between different experimental conditions or between diffe...

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Vydáno v:BMC bioinformatics Ročník 15; číslo 1; s. 293
Hlavní autoři: Bardou, Philippe, Mariette, Jérôme, Escudié, Frédéric, Djemiel, Christophe, Klopp, Christophe
Médium: Journal Article
Jazyk:angličtina
Vydáno: London BioMed Central 29.08.2014
BioMed Central Ltd
Springer Nature B.V
Témata:
Algorithms
Analysis
Bioinformatics
Biomedical and Life Sciences
Computational Biology
Computational Biology/Bioinformatics
Computer Appl. in Life Sciences
Computer Graphics
Computer Science
Dynamics
Freeware
image analysis and data visualization
Imaging
Internet
Java (programming language)
Libraries
Life Sciences
Lists
Mathematics
Microarrays
Software
Source code
Venn diagrams
Web applications
Websites
Edward-Venn
Vizualisation
jquery
Venn
JavaScript
Jquery
ISSN:1471-2105, 1471-2105
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Popis
Shrnutí:Background Venn diagrams are commonly used to display list comparison. In biology, they are widely used to show the differences between gene lists originating from different differential analyses, for instance. They thus allow the comparison between different experimental conditions or between different methods. However, when the number of input lists exceeds four, the diagram becomes difficult to read. Alternative layouts and dynamic display features can improve its use and its readability. Results jvenn is a new JavaScript library. It processes lists and produces Venn diagrams. It handles up to six input lists and presents results using classical or Edwards-Venn layouts. User interactions can be controlled and customized. Finally, jvenn can easily be embeded in a web page, allowing to have dynamic Venn diagrams. Conclusions jvenn is an open source component for web environments helping scientists to analyze their data. The library package, which comes with full documentation and an example, is freely available at http://bioinfo.genotoul.fr/jvenn .
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ISSN:1471-2105
1471-2105
DOI:10.1186/1471-2105-15-293