The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology

The synthetic biology research community describes a standard language for exchanging designs of biological 'parts'. The re-use of previously validated designs is critical to the evolution of synthetic biology from a research discipline to an engineering practice. Here we describe the Synt...

Celý popis

Uložené v:
Podrobná bibliografia
Vydané v:Nature biotechnology Ročník 32; číslo 6; s. 545 - 550
Hlavní autori: Galdzicki, Michal, Clancy, Kevin P, Oberortner, Ernst, Pocock, Matthew, Quinn, Jacqueline Y, Rodriguez, Cesar A, Roehner, Nicholas, Wilson, Mandy L, Adam, Laura, Anderson, J Christopher, Bartley, Bryan A, Beal, Jacob, Chandran, Deepak, Chen, Joanna, Densmore, Douglas, Endy, Drew, Grünberg, Raik, Hallinan, Jennifer, Hillson, Nathan J, Johnson, Jeffrey D, Kuchinsky, Allan, Lux, Matthew, Misirli, Goksel, Peccoud, Jean, Plahar, Hector A, Sirin, Evren, Stan, Guy-Bart, Villalobos, Alan, Wipat, Anil, Gennari, John H, Myers, Chris J, Sauro, Herbert M
Médium: Journal Article
Jazyk:English
Vydavateľské údaje: New York Nature Publishing Group US 01.06.2014
Nature Publishing Group
Predmet:
631/114/2416
Agriculture
Bioinformatics
Biological research
Biology, Experimental
Biomedical Engineering/Biotechnology
Biomedicine
Biotechnology
Communication in science
Documentation
Information Dissemination - methods
Internationality
Life Sciences
perspective
Reference Standards
Research Design - standards
Software - standards
Synthetic biology
Synthetic Biology - standards
Terminology as Topic
Vocabulary, Controlled
ISSN:1087-0156, 1546-1696, 1546-1696
On-line prístup:Získať plný text
Tagy: Pridať tag
Žiadne tagy, Buďte prvý, kto otaguje tento záznam!
Abstract The synthetic biology research community describes a standard language for exchanging designs of biological 'parts'. The re-use of previously validated designs is critical to the evolution of synthetic biology from a research discipline to an engineering practice. Here we describe the Synthetic Biology Open Language (SBOL), a proposed data standard for exchanging designs within the synthetic biology community. SBOL represents synthetic biology designs in a community-driven, formalized format for exchange between software tools, research groups and commercial service providers. The SBOL Developers Group has implemented SBOL as an XML/RDF serialization and provides software libraries and specification documentation to help developers implement SBOL in their own software. We describe early successes, including a demonstration of the utility of SBOL for information exchange between several different software tools and repositories from both academic and industrial partners. As a community-driven standard, SBOL will be updated as synthetic biology evolves to provide specific capabilities for different aspects of the synthetic biology workflow.
AbstractList The re-use of previously validated designs is critical to the evolution of synthetic biology from a research discipline to an engineering practice. Here we describe the Synthetic Biology Open Language (SBOL), a proposed data standard for exchanging designs within the synthetic biology community. SBOL represents synthetic biology designs in a community-driven, formalized format for exchange between software tools, research groups and commercial service providers. The SBOL Developers Group has implemented SBOL as an XML/RDF serialization and provides software libraries and specification documentation to help developers implement SBOL in their own software. We describe early successes, including a demonstration of the utility of SBOL for information exchange between several different software tools and repositories from both academic and industrial partners. As a community-driven standard, SBOL will be updated as synthetic biology evolves to provide specific capabilities for different aspects of the synthetic biology workflow.
The re-use of previously validated designs is critical to the evolution of synthetic biology from a research discipline to an engineering practice. Here we describe the Synthetic Biology Open Language (SBOL), a proposed data standard for exchanging designs within the synthetic biology community. SBOL represents synthetic biology designs in a community-driven, formalized format for exchange between software tools, research groups and commercial service providers. The SBOL Developers Group has implemented SBOL as an XML/RDF serialization and provides software libraries and specification documentation to help developers implement SBOL in their own software. We describe early successes, including a demonstration of the utility of SBOL for information exchange between several different software tools and repositories from both academic and industrial partners. As a community-driven standard, SBOL will be updated as synthetic biology evolves to provide specific capabilities for different aspects of the synthetic biology workflow.The re-use of previously validated designs is critical to the evolution of synthetic biology from a research discipline to an engineering practice. Here we describe the Synthetic Biology Open Language (SBOL), a proposed data standard for exchanging designs within the synthetic biology community. SBOL represents synthetic biology designs in a community-driven, formalized format for exchange between software tools, research groups and commercial service providers. The SBOL Developers Group has implemented SBOL as an XML/RDF serialization and provides software libraries and specification documentation to help developers implement SBOL in their own software. We describe early successes, including a demonstration of the utility of SBOL for information exchange between several different software tools and repositories from both academic and industrial partners. As a community-driven standard, SBOL will be updated as synthetic biology evolves to provide specific capabilities for different aspects of the synthetic biology workflow.
The synthetic biology research community describes a standard language for exchanging designs of biological 'parts'. The re-use of previously validated designs is critical to the evolution of synthetic biology from a research discipline to an engineering practice. Here we describe the Synthetic Biology Open Language (SBOL), a proposed data standard for exchanging designs within the synthetic biology community. SBOL represents synthetic biology designs in a community-driven, formalized format for exchange between software tools, research groups and commercial service providers. The SBOL Developers Group has implemented SBOL as an XML/RDF serialization and provides software libraries and specification documentation to help developers implement SBOL in their own software. We describe early successes, including a demonstration of the utility of SBOL for information exchange between several different software tools and repositories from both academic and industrial partners. As a community-driven standard, SBOL will be updated as synthetic biology evolves to provide specific capabilities for different aspects of the synthetic biology workflow.
Audience Academic
Author Endy, Drew
Anderson, J Christopher
Quinn, Jacqueline Y
Bartley, Bryan A
Peccoud, Jean
Pocock, Matthew
Johnson, Jeffrey D
Kuchinsky, Allan
Villalobos, Alan
Lux, Matthew
Plahar, Hector A
Gennari, John H
Grünberg, Raik
Rodriguez, Cesar A
Hillson, Nathan J
Hallinan, Jennifer
Oberortner, Ernst
Densmore, Douglas
Sirin, Evren
Stan, Guy-Bart
Sauro, Herbert M
Galdzicki, Michal
Misirli, Goksel
Wilson, Mandy L
Wipat, Anil
Clancy, Kevin P
Chen, Joanna
Adam, Laura
Chandran, Deepak
Beal, Jacob
Myers, Chris J
Roehner, Nicholas
Author_xml – sequence: 1
  givenname: Michal
  orcidid: 0000-0002-8392-8183
  surname: Galdzicki
  fullname: Galdzicki, Michal
  organization: Biomedical and Health Informatics, University of Washington
– sequence: 2
  givenname: Kevin P
  surname: Clancy
  fullname: Clancy, Kevin P
  organization: Synthetic Biology Unit, Life Technologies
– sequence: 3
  givenname: Ernst
  surname: Oberortner
  fullname: Oberortner, Ernst
  organization: Department of Electrical and Computer Engineering, Boston University
– sequence: 4
  givenname: Matthew
  surname: Pocock
  fullname: Pocock, Matthew
  organization: School of Computing Science, Newcastle University
– sequence: 5
  givenname: Jacqueline Y
  surname: Quinn
  fullname: Quinn, Jacqueline Y
  organization: Autodesk Research, Autodesk
– sequence: 6
  givenname: Cesar A
  surname: Rodriguez
  fullname: Rodriguez, Cesar A
  organization: Autodesk Research, Autodesk
– sequence: 7
  givenname: Nicholas
  surname: Roehner
  fullname: Roehner, Nicholas
  organization: Bioengineering, University of Utah
– sequence: 8
  givenname: Mandy L
  orcidid: 0000-0002-4778-5744
  surname: Wilson
  fullname: Wilson, Mandy L
  organization: Virginia Bioinformatics Institute, Virginia Tech
– sequence: 9
  givenname: Laura
  surname: Adam
  fullname: Adam, Laura
  organization: Virginia Bioinformatics Institute, Virginia Tech
– sequence: 10
  givenname: J Christopher
  surname: Anderson
  fullname: Anderson, J Christopher
  organization: Department of Bioengineering, University of California, Berkeley
– sequence: 11
  givenname: Bryan A
  surname: Bartley
  fullname: Bartley, Bryan A
  organization: Department of Bioengineering, University of Washington
– sequence: 12
  givenname: Jacob
  surname: Beal
  fullname: Beal, Jacob
  organization: Raytheon BBN Technologies
– sequence: 13
  givenname: Deepak
  surname: Chandran
  fullname: Chandran, Deepak
  organization: Autodesk Research, Autodesk
– sequence: 14
  givenname: Joanna
  surname: Chen
  fullname: Chen, Joanna
  organization: Fuels Synthesis Division, Joint Bioenergy Institute (JBEI)
– sequence: 15
  givenname: Douglas
  surname: Densmore
  fullname: Densmore, Douglas
  organization: Department of Electrical and Computer Engineering, Boston University
– sequence: 16
  givenname: Drew
  surname: Endy
  fullname: Endy, Drew
  organization: Department of Bioengineering, Stanford University
– sequence: 17
  givenname: Raik
  surname: Grünberg
  fullname: Grünberg, Raik
  organization: IRIC, University of Montreal
– sequence: 18
  givenname: Jennifer
  surname: Hallinan
  fullname: Hallinan, Jennifer
  organization: School of Computing Science, Newcastle University
– sequence: 19
  givenname: Nathan J
  surname: Hillson
  fullname: Hillson, Nathan J
  organization: Fuels Synthesis Division, Joint Bioenergy Institute (JBEI)
– sequence: 20
  givenname: Jeffrey D
  surname: Johnson
  fullname: Johnson, Jeffrey D
  organization: Plant and Microbial Biology, University of California, Berkeley
– sequence: 21
  givenname: Allan
  surname: Kuchinsky
  fullname: Kuchinsky, Allan
  organization: Molecular Tools Laboratory, Agilent Technologies
– sequence: 22
  givenname: Matthew
  surname: Lux
  fullname: Lux, Matthew
  organization: Virginia Bioinformatics Institute, Virginia Tech
– sequence: 23
  givenname: Goksel
  orcidid: 0000-0002-2454-7188
  surname: Misirli
  fullname: Misirli, Goksel
  organization: School of Computing Science, Newcastle University
– sequence: 24
  givenname: Jean
  orcidid: 0000-0001-7649-6127
  surname: Peccoud
  fullname: Peccoud, Jean
  organization: Virginia Bioinformatics Institute, Virginia Tech
– sequence: 25
  givenname: Hector A
  surname: Plahar
  fullname: Plahar, Hector A
  organization: Fuels Synthesis Division, Joint Bioenergy Institute (JBEI)
– sequence: 26
  givenname: Evren
  surname: Sirin
  fullname: Sirin, Evren
  organization: Clark & Parsia
– sequence: 27
  givenname: Guy-Bart
  surname: Stan
  fullname: Stan, Guy-Bart
  organization: Bioengineering, Imperial College London
– sequence: 28
  givenname: Alan
  surname: Villalobos
  fullname: Villalobos, Alan
  organization: DNA2.0
– sequence: 29
  givenname: Anil
  surname: Wipat
  fullname: Wipat, Anil
  organization: School of Computing Science, Newcastle University
– sequence: 30
  givenname: John H
  surname: Gennari
  fullname: Gennari, John H
  organization: Biomedical and Health Informatics, University of Washington
– sequence: 31
  givenname: Chris J
  surname: Myers
  fullname: Myers, Chris J
  organization: Department of Electrical and Computer Engineering, University of Utah
– sequence: 32
  givenname: Herbert M
  orcidid: 0000-0002-3659-6817
  surname: Sauro
  fullname: Sauro, Herbert M
  email: hsauro@uw.edu
  organization: Department of Bioengineering, University of Washington
BackLink https://www.ncbi.nlm.nih.gov/pubmed/24911500$$D View this record in MEDLINE/PubMed
BookMark eNqNktlqGzEYhYeS0iwt9AmKoDcJ1K72mblMQpeAwVCnvRWylrHCjMaVNGn99pVrO7FDLoJAEuL7N51zWhz53puieI_gGEFSffbzNMZVjV4VJ4hRPkK85kf5DqtyBBHjx8VpjHcQQk45f1McY1ojxCA8Kf7cLgyYrXxamOQUuHJ92zcrMF0aDybSN4NsDDifXU0nF2AZ-nunTQQSqL7rBu_SCsQkvZZBA9uH3bOSyfkGZNQ1PgLnQXyoMN9UeFu8trKN5t32PCt-fv1ye_19NJl-u7m-nIwUZzCNrKk0rhCkWGqDqMFEYlwqxkipkVUWWcswpRQjVRHOuGFUQ62lnBNumebkrDjf5M3N_x5MTKJzUZm2ld70QxSIMVoziOv6BSihZQ0pohn9-AS964fg8yD_KQJJCfeoRrZGOG_7FKRaJxWXpMRVRRDCmRo_Q-WlTedU1tm6_H4QcHEQkJlk_qZGDjGKm9mPl7PTX4fspz12PkTnTcxbFnGR4ibkAP-w_YNh3hktlsF1MqzEzluPg6nQxxiMFcql7IzcQpCuFQiKtXlFNq9Ym_dRgIeAXc5n0O1cMSO-MWFPgKfsPwPn-Is
CitedBy_id crossref_primary_10_3389_fbioe_2022_845240
crossref_primary_10_3389_fbioe_2019_00040
crossref_primary_10_1145_3276498
crossref_primary_10_1016_j_mib_2016_07_004
crossref_primary_10_1007_s10811_018_1510_6
crossref_primary_10_1007_s10462_020_09951_1
crossref_primary_10_1111_1751_7915_14328
crossref_primary_10_1016_j_bios_2019_01_055
crossref_primary_10_1186_s12859_014_0369_z
crossref_primary_10_1038_nbt_3114
crossref_primary_10_1016_j_tibtech_2015_12_006
crossref_primary_10_1038_nbt_3873
crossref_primary_10_1016_j_ymben_2017_06_003
crossref_primary_10_1038_s41467_022_32661_x
crossref_primary_10_1109_JPROC_2019_2916057
crossref_primary_10_1186_1471_2105_15_S14_S7
crossref_primary_10_1038_srep19278
crossref_primary_10_1109_LLS_2016_2546546
crossref_primary_10_1093_nar_gkw1226
crossref_primary_10_3389_fcell_2017_00077
crossref_primary_10_1038_531401a
crossref_primary_10_1093_nar_gku1114
crossref_primary_10_1038_s41467_019_13189_z
crossref_primary_10_1049_enb2_12035
crossref_primary_10_15252_embr_202050521
crossref_primary_10_1038_nbt_3107
crossref_primary_10_1038_nmeth_3052
crossref_primary_10_1038_s41540_019_0114_3
crossref_primary_10_1186_s13036_016_0040_5
crossref_primary_10_1186_s12934_024_02370_9
crossref_primary_10_3389_fbioe_2014_00042
crossref_primary_10_1109_TMSCS_2015_2478442
crossref_primary_10_3389_fbioe_2020_01009
crossref_primary_10_1177_0263775816637872
crossref_primary_10_1016_j_csbj_2024_10_045
crossref_primary_10_1111_1751_7915_13612
crossref_primary_10_1371_journal_pone_0132502
crossref_primary_10_1126_science_aac7341
crossref_primary_10_1039_C5IB00274E
crossref_primary_10_1007_s12155_015_9660_8
crossref_primary_10_1371_journal_pbio_1002310
crossref_primary_10_1093_synbio_ysab028
crossref_primary_10_1038_srep34107
crossref_primary_10_1093_synbio_ysae015
crossref_primary_10_1186_s40504_017_0061_y
crossref_primary_10_1111_febs_15652
crossref_primary_10_1038_s42003_018_0076_9
crossref_primary_10_1093_nar_gku1181
crossref_primary_10_1038_s41597_019_0263_7
crossref_primary_10_1049_enb_2019_0001
crossref_primary_10_1016_j_biosystems_2015_08_006
crossref_primary_10_1038_s41467_022_30588_x
crossref_primary_10_1109_TBME_2016_2555481
crossref_primary_10_1016_j_meteno_2015_06_003
crossref_primary_10_1093_synbio_ysae009
crossref_primary_10_1145_2668126
crossref_primary_10_1016_j_copbio_2014_12_015
crossref_primary_10_3389_fbioe_2014_00061
crossref_primary_10_3390_synbio3030011
crossref_primary_10_1007_s11569_016_0251_8
crossref_primary_10_1039_C4CS00351A
crossref_primary_10_1186_s13036_016_0024_5
crossref_primary_10_3390_pr6090167
crossref_primary_10_1016_j_biosystems_2017_11_008
crossref_primary_10_1002_adbi_202300529
crossref_primary_10_3389_fbioe_2014_00060
crossref_primary_10_1016_j_nancom_2018_03_001
crossref_primary_10_1016_j_plantsci_2018_02_024
crossref_primary_10_1186_s40694_020_00092_2
crossref_primary_10_1021_acssynbio_5b00295
crossref_primary_10_1093_bib_bbz065
crossref_primary_10_1186_s12859_024_05782_x
crossref_primary_10_1109_TBME_2016_2591960
crossref_primary_10_1109_JPROC_2015_2443832
crossref_primary_10_1128_microbiolspec_PLAS_0033_2014
crossref_primary_10_1038_s41467_023_38791_0
crossref_primary_10_1093_synbio_ysab001
crossref_primary_10_1007_s40684_020_00196_5
crossref_primary_10_1111_1751_7915_13326
crossref_primary_10_1145_2631921
crossref_primary_10_1016_j_tibtech_2015_11_006
crossref_primary_10_1371_journal_pcbi_1009987
crossref_primary_10_1371_journal_pcbi_1011652
crossref_primary_10_1111_1751_7915_13609
crossref_primary_10_1038_s42003_018_0220_6
crossref_primary_10_1093_bib_bby087
crossref_primary_10_1002_biot_201600109
crossref_primary_10_3389_fbioe_2015_00019
crossref_primary_10_1002_aic_15192
crossref_primary_10_1089_apb_2023_0035
crossref_primary_10_1029_2021EA001797
crossref_primary_10_1093_nar_gkz1024
crossref_primary_10_1093_synbio_ysad014
crossref_primary_10_1093_synbio_ysw001
crossref_primary_10_1049_iet_syb_2016_0043
crossref_primary_10_1007_s00299_018_2270_0
crossref_primary_10_1093_nar_gkv272
crossref_primary_10_1186_s12859_020_03880_0
crossref_primary_10_1007_s12033_021_00386_9
crossref_primary_10_1145_2641571
crossref_primary_10_3390_ijms24087296
crossref_primary_10_3389_fbioe_2022_954707
crossref_primary_10_1016_j_copbio_2024_103143
crossref_primary_10_1049_enb_2017_0020
crossref_primary_10_1016_j_addr_2016_08_008
crossref_primary_10_1016_j_plantsci_2018_04_005
crossref_primary_10_1093_synbio_ysz010
crossref_primary_10_1093_femsle_fnz125
crossref_primary_10_3389_fsybi_2025_1548572
crossref_primary_10_1039_C6NP00018E
crossref_primary_10_1093_nar_gkab374
crossref_primary_10_2217_nnm_14_163
crossref_primary_10_1007_s00521_021_05711_6
crossref_primary_10_1515_dzph_2020_0051
crossref_primary_10_1042_EBC20160037
crossref_primary_10_1042_BST20160347
crossref_primary_10_1016_j_cbpa_2017_08_005
Cites_doi 10.1126/science.1207084
10.1073/pnas.85.8.2444
10.1093/nar/gkj092
10.1146/annurev-chembioeng-061312-103312
10.1038/nbt.1666
10.1093/bioinformatics/btp457
10.1038/nrg3197
10.1371/journal.pone.0018882
10.1093/bioinformatics/btr048
10.1038/nbt.1753
10.1093/nar/gks531
10.1186/1754-1611-3-4
10.1186/gb-2005-6-5-r44
10.1016/j.jbi.2010.03.002
10.1371/journal.pcbi.1000529
10.1186/1471-2105-7-285
10.1186/1754-1611-7-13
10.1371/journal.pone.0022490
10.1016/B978-0-12-385120-8.00005-X
10.1371/journal.pone.0017005
10.1093/bioinformatics/btg015
10.1038/35002131
10.1021/sb2000116
10.1186/1754-1611-3-19
10.1016/j.pbiomolbio.2004.01.004
10.1038/nbt.1568
10.1038/nrg2775
10.1021/sb300030d
10.1038/nrg2697
10.1038/nbt.1558
10.1186/1754-1611-6-1
10.1038/nbt1413
10.1007/978-1-59745-525-1_5
ContentType Journal Article
Copyright Springer Nature America, Inc. 2014
COPYRIGHT 2014 Nature Publishing Group
Copyright Nature Publishing Group Jun 2014
Copyright_xml – notice: Springer Nature America, Inc. 2014
– notice: COPYRIGHT 2014 Nature Publishing Group
– notice: Copyright Nature Publishing Group Jun 2014
DBID AAYXX
CITATION
CGR
CUY
CVF
ECM
EIF
NPM
N95
IOV
ISR
3V.
7QO
7QP
7QR
7T7
7TK
7TM
7X7
7XB
88A
88E
88I
8AO
8FD
8FE
8FG
8FH
8FI
8FJ
8FK
8G5
ABJCF
ABUWG
AEUYN
AFKRA
AZQEC
BBNVY
BENPR
BGLVJ
BHPHI
C1K
CCPQU
DWQXO
FR3
FYUFA
GHDGH
GNUQQ
GUQSH
HCIFZ
K9.
L6V
LK8
M0S
M1P
M2O
M2P
M7P
M7S
MBDVC
P64
PHGZM
PHGZT
PJZUB
PKEHL
PPXIY
PQEST
PQGLB
PQQKQ
PQUKI
PTHSS
Q9U
RC3
7X8
DOI 10.1038/nbt.2891
DatabaseName CrossRef
Medline
MEDLINE
MEDLINE (Ovid)
MEDLINE
MEDLINE
PubMed
Gale Business: Insights
Gale In Context: Opposing Viewpoints
Gale In Context: Science
ProQuest Central (Corporate)
Biotechnology Research Abstracts
Calcium & Calcified Tissue Abstracts
Chemoreception Abstracts
Industrial and Applied Microbiology Abstracts (Microbiology A)
Neurosciences Abstracts
Nucleic Acids Abstracts
Health & Medical Collection (ProQuest)
ProQuest Central (purchase pre-March 2016)
Biology Database (Alumni Edition)
Medical Database (Alumni Edition)
Science Database (Alumni Edition)
ProQuest Pharma Collection
Technology Research Database
ProQuest SciTech Collection
ProQuest Technology Collection
ProQuest Natural Science Collection
ProQuest Hospital Collection
Hospital Premium Collection (Alumni Edition)
ProQuest Central (Alumni) (purchase pre-March 2016)
Research Library
Materials Science & Engineering Collection (subscription)
ProQuest Central (Alumni)
ProQuest One Sustainability (subscription)
ProQuest Central UK/Ireland
ProQuest Central Essentials
Biological Science Collection (subscription)
ProQuest Central
Technology collection
Natural Science Collection
Environmental Sciences and Pollution Management
ProQuest One Community College
ProQuest Central
Engineering Research Database
Health Research Premium Collection
Health Research Premium Collection (Alumni)
ProQuest Central Student
Research Library Prep
SciTech Premium Collection
ProQuest Health & Medical Complete (Alumni)
ProQuest Engineering Collection
Biological Sciences
ProQuest Health & Medical Collection
PML(ProQuest Medical Library)
Research Library
Science Database (ProQuest)
Biological Science Database
Engineering Database (subscription)
Research Library (Corporate)
Biotechnology and BioEngineering Abstracts
ProQuest Central Premium
ProQuest One Academic
ProQuest Health & Medical Research Collection
ProQuest One Academic Middle East (New)
ProQuest One Health & Nursing
ProQuest One Academic Eastern Edition (DO NOT USE)
ProQuest One Applied & Life Sciences
ProQuest One Academic (retired)
ProQuest One Academic UKI Edition
Engineering Collection (ProQuest)
ProQuest Central Basic
Genetics Abstracts
MEDLINE - Academic
DatabaseTitle CrossRef
MEDLINE
Medline Complete
MEDLINE with Full Text
PubMed
MEDLINE (Ovid)
Research Library Prep
ProQuest Central Student
ProQuest Central Essentials
Nucleic Acids Abstracts
SciTech Premium Collection
Environmental Sciences and Pollution Management
ProQuest One Applied & Life Sciences
ProQuest One Sustainability
Health Research Premium Collection
Natural Science Collection
Health & Medical Research Collection
Biological Science Collection
Chemoreception Abstracts
Industrial and Applied Microbiology Abstracts (Microbiology A)
ProQuest Central (New)
ProQuest Medical Library (Alumni)
Engineering Collection
Engineering Database
ProQuest Science Journals (Alumni Edition)
ProQuest Biological Science Collection
ProQuest One Academic Eastern Edition
ProQuest Hospital Collection
ProQuest Technology Collection
Health Research Premium Collection (Alumni)
Biological Science Database
Neurosciences Abstracts
ProQuest Hospital Collection (Alumni)
Biotechnology and BioEngineering Abstracts
ProQuest Health & Medical Complete
ProQuest One Academic UKI Edition
Engineering Research Database
ProQuest One Academic
Calcium & Calcified Tissue Abstracts
ProQuest One Academic (New)
Technology Collection
Technology Research Database
ProQuest One Academic Middle East (New)
ProQuest Health & Medical Complete (Alumni)
ProQuest Central (Alumni Edition)
ProQuest One Community College
ProQuest One Health & Nursing
Research Library (Alumni Edition)
ProQuest Natural Science Collection
ProQuest Pharma Collection
ProQuest Biology Journals (Alumni Edition)
ProQuest Central
ProQuest Health & Medical Research Collection
Genetics Abstracts
ProQuest Engineering Collection
Biotechnology Research Abstracts
Health and Medicine Complete (Alumni Edition)
ProQuest Central Korea
ProQuest Research Library
ProQuest Central Basic
ProQuest Science Journals
ProQuest SciTech Collection
ProQuest Medical Library
Materials Science & Engineering Collection
ProQuest Central (Alumni)
MEDLINE - Academic
DatabaseTitleList
MEDLINE - Academic
Engineering Research Database
MEDLINE
Research Library Prep
Database_xml – sequence: 1
  dbid: NPM
  name: PubMed
  url: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed
  sourceTypes: Index Database
– sequence: 2
  dbid: BENPR
  name: ProQuest Central
  url: https://www.proquest.com/central
  sourceTypes: Aggregation Database
DeliveryMethod fulltext_linktorsrc
Discipline Medicine
Engineering
Agriculture
Biology
EISSN 1546-1696
EndPage 550
ExternalDocumentID 3329498571
A372883112
24911500
10_1038_nbt_2891
Genre Research Support, U.S. Gov't, Non-P.H.S
Research Support, Non-U.S. Gov't
Journal Article
Research Support, N.I.H., Extramural
GrantInformation_xml – fundername: NLM NIH HHS
  grantid: R41 LM010745
– fundername: NHGRI NIH HHS
  grantid: R42 HG006737
– fundername: NLM NIH HHS
  grantid: T15 LM007442
GroupedDBID ---
-~X
.55
.GJ
0R~
123
29M
2FS
2XV
36B
39C
3V.
4.4
4R4
53G
5BI
5M7
5RE
5S5
70F
7X7
88A
88E
88I
8AO
8CJ
8FE
8FG
8FH
8FI
8FJ
8G5
8R4
8R5
A8Z
AAEEF
AAHBH
AAIKC
AAMNW
AARCD
AAYOK
AAYZH
AAZLF
ABAWZ
ABDBF
ABDPE
ABEFU
ABJCF
ABJNI
ABLJU
ABOCM
ABUWG
ACBTR
ACBWK
ACGFO
ACGFS
ACGOD
ACIWK
ACMJI
ACPRK
ACUHS
ADBBV
ADFRT
AENEX
AEUYN
AFANA
AFBBN
AFFNX
AFKRA
AFRAH
AFSHS
AGAYW
AGHTU
AHBCP
AHMBA
AHOSX
AHSBF
AIBTJ
ALFFA
ALIPV
ALMA_UNASSIGNED_HOLDINGS
AMTXH
ARMCB
ASPBG
AVWKF
AXYYD
AZFZN
AZQEC
BAAKF
BBNVY
BENPR
BGLVJ
BHPHI
BKKNO
BKOMP
BPHCQ
BVXVI
C0K
CCPQU
D1J
DB5
DU5
DWQXO
EAD
EAP
EAS
EBC
EBS
EE.
EJD
EMB
EMK
EMOBN
ESX
EXGXG
F5P
FA8
FEDTE
FQGFK
FSGXE
FYUFA
GNUQQ
GUQSH
GX1
HCIFZ
HMCUK
HVGLF
HZ~
IAG
IAO
IEA
IEP
IH2
IHR
INH
INR
IOV
ISR
ITC
KOO
L6V
LGEZI
LK8
LOTEE
M0L
M1P
M2O
M2P
M7P
M7S
ML0
MVM
N95
NADUK
NEJ
NNMJJ
NXXTH
O9-
ODYON
P2P
PKN
PQQKQ
PROAC
PSQYO
PTHSS
Q2X
QF4
QM4
QN7
QO4
RNS
RNT
RNTTT
RVV
RXW
SHXYY
SIXXV
SJN
SNYQT
SOJ
SV3
TAE
TAOOD
TBHMF
TDRGL
TN5
TSG
TUS
U5U
UKHRP
X7M
XI7
XOL
Y6R
YZZ
ZGI
ZHY
ZXP
~KM
AAYXX
ABFSG
ACSTC
AFFHD
ALPWD
ATHPR
CITATION
PHGZM
PHGZT
PJZUB
PPXIY
PQGLB
CGR
CUY
CVF
ECM
EIF
NFIDA
NPM
7QO
7QP
7QR
7T7
7TK
7TM
7XB
8FD
8FK
C1K
FR3
K9.
MBDVC
P64
PKEHL
PQEST
PQUKI
Q9U
RC3
7X8
PUEGO
ID FETCH-LOGICAL-c650t-fe8d281042ade14e23a227c5537d1fcf1ff5244421c83656e54d0ddaab36f5d63
IEDL.DBID M7P
ISICitedReferencesCount 200
ISICitedReferencesURI http://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=Summon&SrcAuth=ProQuest&DestLinkType=CitingArticles&DestApp=WOS_CPL&KeyUT=000337233800016&url=https%3A%2F%2Fcvtisr.summon.serialssolutions.com%2F%23%21%2Fsearch%3Fho%3Df%26include.ft.matches%3Dt%26l%3Dnull%26q%3D
ISSN 1087-0156
1546-1696
IngestDate Tue Oct 07 09:41:19 EDT 2025
Thu Oct 02 20:46:31 EDT 2025
Tue Oct 07 05:19:11 EDT 2025
Tue Nov 11 10:27:05 EST 2025
Tue Nov 04 17:56:41 EST 2025
Thu Nov 13 14:51:27 EST 2025
Thu Nov 13 15:39:42 EST 2025
Sat Nov 29 08:29:24 EST 2025
Thu Apr 03 07:10:13 EDT 2025
Tue Nov 18 22:53:25 EST 2025
Sat Nov 29 06:43:23 EST 2025
Fri Feb 21 02:38:16 EST 2025
IsDoiOpenAccess false
IsOpenAccess true
IsPeerReviewed true
IsScholarly true
Issue 6
Language English
LinkModel DirectLink
MergedId FETCHMERGED-LOGICAL-c650t-fe8d281042ade14e23a227c5537d1fcf1ff5244421c83656e54d0ddaab36f5d63
Notes ObjectType-Article-1
SourceType-Scholarly Journals-1
ObjectType-Feature-2
content type line 14
content type line 23
ORCID 0000-0002-4778-5744
0000-0002-8392-8183
0000-0001-7649-6127
0000-0002-3659-6817
0000-0002-2454-7188
0000000176496127
0000000247785744
0000000236596817
0000000283928183
0000000224547188
OpenAccessLink https://www.nature.com/articles/nbt.2891.pdf
PMID 24911500
PQID 1534303704
PQPubID 47191
PageCount 6
ParticipantIDs proquest_miscellaneous_1554950299
proquest_miscellaneous_1534790414
proquest_journals_1534303704
gale_infotracmisc_A372883112
gale_infotracacademiconefile_A372883112
gale_incontextgauss_ISR_A372883112
gale_incontextgauss_IOV_A372883112
gale_businessinsightsgauss_A372883112
pubmed_primary_24911500
crossref_citationtrail_10_1038_nbt_2891
crossref_primary_10_1038_nbt_2891
springer_journals_10_1038_nbt_2891
PublicationCentury 2000
PublicationDate 2014-06-01
PublicationDateYYYYMMDD 2014-06-01
PublicationDate_xml – month: 06
  year: 2014
  text: 2014-06-01
  day: 01
PublicationDecade 2010
PublicationPlace New York
PublicationPlace_xml – name: New York
– name: United States
PublicationSubtitle The Science and Business of Biotechnology
PublicationTitle Nature biotechnology
PublicationTitleAbbrev Nat Biotechnol
PublicationTitleAlternate Nat Biotechnol
PublicationYear 2014
Publisher Nature Publishing Group US
Nature Publishing Group
Publisher_xml – name: Nature Publishing Group US
– name: Nature Publishing Group
References Benenson (CR3) 2012; 13
Le Novère (CR32) 2006; 34
Mungall, Batchelor, Eilbeck (CR19) 2011; 44
Myers (CR27) 2009; 25
Demir (CR30) 2010; 28
CR16
Galdzicki, Rodriguez, Chandran, Sauro, Gennari (CR22) 2011; 6
Nandagopal, Elowitz (CR5) 2011; 333
Lloyd, Halstead, Nielsen (CR33) 2004; 85
CR13
Hillson, Rosengarten, Keasling (CR36) 2012; 1
CR10
Kelly (CR12) 2009; 3
Villalobos, Ness, Gustafsson, Minshull, Govindarajan (CR35) 2006; 7
Keasling (CR2) 2005; 35
Misirli (CR37) 2011; 27
Peccoud (CR9) 2011; 29
Bilitchenko (CR23) 2011; 6
Chandran, Bergmann, Sauro (CR39) 2009; 3
Beal, Lu, Weiss (CR38) 2011; 6
Beal (CR8) 2012; 1
Chen, Densmore, Ham, Keasling, Hillson (CR24) 2012; 6
Salis, Mirsky, Voigt (CR25) 2009; 27
Ham (CR28) 2012; 40
Hucka (CR17) 2003; 19
CR7
Gardner, Cantor, Collins (CR21) 2000; 403
Cai, Lux, Adam, Peccoud (CR29) 2009; 5
Faeder, Blinov, Hlavacek (CR34) 2009; 500
Pearson, Lipman (CR14) 1988; 85
Le Novère (CR31) 2009; 27
Khalil, Collins (CR1) 2010; 11
Woolston, Edgar, Stephanopoulos (CR4) 2013; 4
CR20
Eilbeck (CR18) 2005; 6
Xia (CR26) 2011; 498
Mukherji, van Oudenaarden (CR6) 2009; 10
Kahl, Endy (CR15) 2013; 7
Canton, Labno, Endy (CR11) 2008; 26
Y Benenson (BFnbt2891_CR3) 2012; 13
D Chandran (BFnbt2891_CR39) 2009; 3
J Peccoud (BFnbt2891_CR9) 2011; 29
J Chen (BFnbt2891_CR24) 2012; 6
J Beal (BFnbt2891_CR8) 2012; 1
N Le Novère (BFnbt2891_CR32) 2006; 34
S Mukherji (BFnbt2891_CR6) 2009; 10
CJ Mungall (BFnbt2891_CR19) 2011; 44
A Villalobos (BFnbt2891_CR35) 2006; 7
BFnbt2891_CR13
BFnbt2891_CR10
B Canton (BFnbt2891_CR11) 2008; 26
B Xia (BFnbt2891_CR26) 2011; 498
M Hucka (BFnbt2891_CR17) 2003; 19
G Misirli (BFnbt2891_CR37) 2011; 27
BFnbt2891_CR16
Y Cai (BFnbt2891_CR29) 2009; 5
N Le Novère (BFnbt2891_CR31) 2009; 27
HM Salis (BFnbt2891_CR25) 2009; 27
CM Lloyd (BFnbt2891_CR33) 2004; 85
N Nandagopal (BFnbt2891_CR5) 2011; 333
NJ Hillson (BFnbt2891_CR36) 2012; 1
E Demir (BFnbt2891_CR30) 2010; 28
TS Ham (BFnbt2891_CR28) 2012; 40
LJ Kahl (BFnbt2891_CR15) 2013; 7
AS Khalil (BFnbt2891_CR1) 2010; 11
JR Kelly (BFnbt2891_CR12) 2009; 3
J Keasling (BFnbt2891_CR2) 2005; 35
WR Pearson (BFnbt2891_CR14) 1988; 85
BM Woolston (BFnbt2891_CR4) 2013; 4
BFnbt2891_CR20
J Beal (BFnbt2891_CR38) 2011; 6
TS Gardner (BFnbt2891_CR21) 2000; 403
L Bilitchenko (BFnbt2891_CR23) 2011; 6
BFnbt2891_CR7
CJ Myers (BFnbt2891_CR27) 2009; 25
M Galdzicki (BFnbt2891_CR22) 2011; 6
K Eilbeck (BFnbt2891_CR18) 2005; 6
JR Faeder (BFnbt2891_CR34) 2009; 500
15892872 - Genome Biol. 2005;6(5):R44
23663447 - J Biol Eng. 2013 May 10;7(1):13
21390321 - PLoS One. 2011 Feb 24;6(2):e17005
19668183 - Nat Biotechnol. 2009 Aug;27(8):735-41
25574632 - Nat Biotechnol. 2015 Jan;33(1):25
19801975 - Nat Biotechnol. 2009 Oct;27(10):946-50
16381960 - Nucleic Acids Res. 2006 Jan 1;34(Database issue):D689-91
21221092 - Nat Biotechnol. 2011 Jan;29(1):22; discussion 22-3
23651006 - ACS Synth Biol. 2012 Jan 20;1(1):14-21
22373390 - J Biol Eng. 2012 Feb 28;6(1):1
16756672 - BMC Bioinformatics. 2006 Jun 06;7:285
20395970 - Nat Rev Genet. 2010 May;11(5):367-79
20829833 - Nat Biotechnol. 2010 Sep;28(9):935-42
3162770 - Proc Natl Acad Sci U S A. 1988 Apr;85(8):2444-8
19628507 - Bioinformatics. 2009 Nov 1;25(21):2848-9
22718978 - Nucleic Acids Res. 2012 Oct;40(18):e141
21601675 - Methods Enzymol. 2011;498:97-135
19298678 - J Biol Eng. 2009 Mar 20;3:4
19816554 - PLoS Comput Biol. 2009 Oct;5(10):e1000529
21885772 - Science. 2011 Sep 2;333(6047):1244-8
21559524 - PLoS One. 2011 Apr 29;6(4):e18882
10659857 - Nature. 2000 Jan 20;403(6767):339-42
19898500 - Nat Rev Genet. 2009 Dec;10(12):859-71
18612302 - Nat Biotechnol. 2008 Jul;26(7):787-93
21850228 - PLoS One. 2011;6(8):e22490
19874625 - J Biol Eng. 2009 Oct 29;3:19
25574630 - Nat Biotechnol. 2015 Jan;33(1):24-5
19399430 - Methods Mol Biol. 2009;500:113-67
23651286 - ACS Synth Biol. 2012 Aug 17;1(8):317-31
23540289 - Annu Rev Chem Biomol Eng. 2013;4:259-88
12611808 - Bioinformatics. 2003 Mar 1;19(4):524-31
21296753 - Bioinformatics. 2011 Apr 1;27(7):973-9
22688678 - Nat Rev Genet. 2012 Jun 12;13(7):455-68
15142756 - Prog Biophys Mol Biol. 2004 Jun-Jul;85(2-3):433-50
20226267 - J Biomed Inform. 2011 Feb;44(1):87-93
References_xml – volume: 35
  start-page: 18
  year: 2005
  end-page: 21
  ident: CR2
  article-title: The promise of synthetic biology
  publication-title: The Bridge
– volume: 333
  start-page: 1244
  year: 2011
  end-page: 1248
  ident: CR5
  article-title: Synthetic biology: integrated gene circuits
  publication-title: Science
  doi: 10.1126/science.1207084
– volume: 85
  start-page: 2444
  year: 1988
  end-page: 2448
  ident: CR14
  article-title: Improved tools for biological sequence comparison
  publication-title: Proc. Natl. Acad. Sci. USA
  doi: 10.1073/pnas.85.8.2444
– volume: 34
  start-page: D689
  year: 2006
  end-page: D691
  ident: CR32
  article-title: BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkj092
– volume: 4
  start-page: 259
  year: 2013
  end-page: 288
  ident: CR4
  article-title: Metabolic engineering: past and future
  publication-title: Annu. Rev. Chem. Biomol. Eng.
  doi: 10.1146/annurev-chembioeng-061312-103312
– volume: 28
  start-page: 935
  year: 2010
  end-page: 942
  ident: CR30
  article-title: The BioPAX community standard for pathway data sharing
  publication-title: Nat. Biotechnol.
  doi: 10.1038/nbt.1666
– ident: CR16
– volume: 25
  start-page: 2848
  year: 2009
  end-page: 2849
  ident: CR27
  article-title: iBioSim: a tool for the analysis and design of genetic circuits
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btp457
– ident: CR10
– volume: 13
  start-page: 455
  year: 2012
  end-page: 468
  ident: CR3
  article-title: Biomolecular computing systems: principles, progress and potential
  publication-title: Nat. Rev. Genet.
  doi: 10.1038/nrg3197
– volume: 6
  start-page: e18882
  year: 2011
  ident: CR23
  article-title: Eugene: a domain specific language for specifying and constraining synthetic biological parts, devices, and systems
  publication-title: PLoS ONE
  doi: 10.1371/journal.pone.0018882
– volume: 27
  start-page: 973
  year: 2011
  end-page: 979
  ident: CR37
  article-title: Model annotation for synthetic biology: automating model to nucleotide sequence conversion
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btr048
– volume: 29
  start-page: 22
  year: 2011
  ident: CR9
  article-title: Essential information for synthetic DNA sequences
  publication-title: Nat. Biotechnol.
  doi: 10.1038/nbt.1753
– volume: 40
  start-page: e141
  year: 2012
  ident: CR28
  article-title: Design, implementation and practice of JBEI-ICE: an open source biological part registry platform and tools
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gks531
– volume: 3
  start-page: 4
  year: 2009
  ident: CR12
  article-title: Measuring the activity of BioBrick promoters using an reference standard
  publication-title: J. Biol. Eng.
  doi: 10.1186/1754-1611-3-4
– volume: 6
  start-page: R44
  year: 2005
  ident: CR18
  article-title: The Sequence Ontology: a tool for the unification of genome annotations
  publication-title: Genome Biol.
  doi: 10.1186/gb-2005-6-5-r44
– volume: 44
  start-page: 87
  year: 2011
  end-page: 93
  ident: CR19
  article-title: Evolution of the Sequence Ontology terms and relationships
  publication-title: J. Biomed. Inform.
  doi: 10.1016/j.jbi.2010.03.002
– volume: 5
  start-page: e1000529
  year: 2009
  ident: CR29
  article-title: Modeling structure-function relationships in synthetic DNA sequences using attribute grammars
  publication-title: PLoS Comput. Biol.
  doi: 10.1371/journal.pcbi.1000529
– volume: 7
  start-page: 285
  year: 2006
  ident: CR35
  article-title: Gene Designer: a synthetic biology tool for constructing artificial DNA segments
  publication-title: BMC Bioinformatics
  doi: 10.1186/1471-2105-7-285
– volume: 7
  start-page: 13
  year: 2013
  ident: CR15
  article-title: A survey of enabling technologies in synthetic biology
  publication-title: J. Biol. Eng.
  doi: 10.1186/1754-1611-7-13
– volume: 6
  start-page: e22490
  year: 2011
  ident: CR38
  article-title: Automatic compilation from high-level biologically-oriented programming language to genetic regulatory networks
  publication-title: PLoS ONE
  doi: 10.1371/journal.pone.0022490
– volume: 498
  start-page: 97
  year: 2011
  end-page: 135
  ident: CR26
  article-title: Developer's and user's guide to Clotho v2.0 A software platform for the creation of synthetic biological systems
  publication-title: Methods Enzymol.
  doi: 10.1016/B978-0-12-385120-8.00005-X
– volume: 6
  start-page: e17005
  year: 2011
  ident: CR22
  article-title: Standard Biological Parts Knowledgebase
  publication-title: PLoS ONE
  doi: 10.1371/journal.pone.0017005
– volume: 19
  start-page: 524
  year: 2003
  end-page: 531
  ident: CR17
  article-title: The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btg015
– volume: 403
  start-page: 339
  year: 2000
  end-page: 342
  ident: CR21
  article-title: Construction of a genetic toggle switch in
  publication-title: Nature
  doi: 10.1038/35002131
– volume: 1
  start-page: 14
  year: 2012
  end-page: 21
  ident: CR36
  article-title: j5 DNA Assembly Design Automation Software
  publication-title: ACS Synth. Biol.
  doi: 10.1021/sb2000116
– volume: 3
  start-page: 19
  year: 2009
  ident: CR39
  article-title: TinkerCell: modular CAD tool for synthetic biology
  publication-title: J. Biol. Eng.
  doi: 10.1186/1754-1611-3-19
– ident: CR13
– volume: 85
  start-page: 433
  year: 2004
  end-page: 450
  ident: CR33
  article-title: CellML: its future, present and past
  publication-title: Prog. Biophys. Mol. Biol.
  doi: 10.1016/j.pbiomolbio.2004.01.004
– volume: 27
  start-page: 946
  year: 2009
  end-page: 950
  ident: CR25
  article-title: Automated design of synthetic ribosome binding sites to control protein expression
  publication-title: Nat. Biotechnol.
  doi: 10.1038/nbt.1568
– volume: 11
  start-page: 367
  year: 2010
  end-page: 379
  ident: CR1
  article-title: Synthetic biology: applications come of age
  publication-title: Nat. Rev. Genet.
  doi: 10.1038/nrg2775
– volume: 1
  start-page: 317
  year: 2012
  end-page: 331
  ident: CR8
  article-title: An end-to-end workflow for engineering of biological networks from high-level specifications
  publication-title: ACS Synth. Biol.
  doi: 10.1021/sb300030d
– ident: CR7
– volume: 10
  start-page: 859
  year: 2009
  end-page: 871
  ident: CR6
  article-title: Synthetic biology: understanding biological design from synthetic circuits
  publication-title: Nat. Rev. Genet.
  doi: 10.1038/nrg2697
– volume: 27
  start-page: 735
  year: 2009
  end-page: 741
  ident: CR31
  article-title: The Systems Biology Graphical Notation
  publication-title: Nat. Biotechnol.
  doi: 10.1038/nbt.1558
– volume: 6
  start-page: 1
  year: 2012
  ident: CR24
  article-title: DeviceEditor visual biological CAD canvas
  publication-title: J. Biol. Eng.
  doi: 10.1186/1754-1611-6-1
– volume: 26
  start-page: 787
  year: 2008
  end-page: 793
  ident: CR11
  article-title: Refinement and standardization of synthetic biological parts and devices
  publication-title: Nat. Biotechnol.
  doi: 10.1038/nbt1413
– volume: 500
  start-page: 113
  year: 2009
  end-page: 167
  ident: CR34
  article-title: Rule-based modeling of biochemical systems with BioNetGen
  publication-title: Methods Mol. Biol.
  doi: 10.1007/978-1-59745-525-1_5
– ident: CR20
– volume: 26
  start-page: 787
  year: 2008
  ident: BFnbt2891_CR11
  publication-title: Nat. Biotechnol.
  doi: 10.1038/nbt1413
– ident: BFnbt2891_CR10
– volume: 3
  start-page: 19
  year: 2009
  ident: BFnbt2891_CR39
  publication-title: J. Biol. Eng.
  doi: 10.1186/1754-1611-3-19
– volume: 35
  start-page: 18
  year: 2005
  ident: BFnbt2891_CR2
  publication-title: The Bridge
– ident: BFnbt2891_CR16
– volume: 1
  start-page: 317
  year: 2012
  ident: BFnbt2891_CR8
  publication-title: ACS Synth. Biol.
  doi: 10.1021/sb300030d
– ident: BFnbt2891_CR7
– volume: 11
  start-page: 367
  year: 2010
  ident: BFnbt2891_CR1
  publication-title: Nat. Rev. Genet.
  doi: 10.1038/nrg2775
– volume: 27
  start-page: 946
  year: 2009
  ident: BFnbt2891_CR25
  publication-title: Nat. Biotechnol.
  doi: 10.1038/nbt.1568
– volume: 6
  start-page: e18882
  year: 2011
  ident: BFnbt2891_CR23
  publication-title: PLoS ONE
  doi: 10.1371/journal.pone.0018882
– volume: 27
  start-page: 735
  year: 2009
  ident: BFnbt2891_CR31
  publication-title: Nat. Biotechnol.
  doi: 10.1038/nbt.1558
– volume: 13
  start-page: 455
  year: 2012
  ident: BFnbt2891_CR3
  publication-title: Nat. Rev. Genet.
  doi: 10.1038/nrg3197
– volume: 500
  start-page: 113
  year: 2009
  ident: BFnbt2891_CR34
  publication-title: Methods Mol. Biol.
  doi: 10.1007/978-1-59745-525-1_5
– volume: 403
  start-page: 339
  year: 2000
  ident: BFnbt2891_CR21
  publication-title: Nature
  doi: 10.1038/35002131
– volume: 27
  start-page: 973
  year: 2011
  ident: BFnbt2891_CR37
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btr048
– volume: 4
  start-page: 259
  year: 2013
  ident: BFnbt2891_CR4
  publication-title: Annu. Rev. Chem. Biomol. Eng.
  doi: 10.1146/annurev-chembioeng-061312-103312
– volume: 1
  start-page: 14
  year: 2012
  ident: BFnbt2891_CR36
  publication-title: ACS Synth. Biol.
  doi: 10.1021/sb2000116
– volume: 3
  start-page: 4
  year: 2009
  ident: BFnbt2891_CR12
  publication-title: J. Biol. Eng.
  doi: 10.1186/1754-1611-3-4
– volume: 29
  start-page: 22
  year: 2011
  ident: BFnbt2891_CR9
  publication-title: Nat. Biotechnol.
  doi: 10.1038/nbt.1753
– volume: 85
  start-page: 2444
  year: 1988
  ident: BFnbt2891_CR14
  publication-title: Proc. Natl. Acad. Sci. USA
  doi: 10.1073/pnas.85.8.2444
– volume: 6
  start-page: e17005
  year: 2011
  ident: BFnbt2891_CR22
  publication-title: PLoS ONE
  doi: 10.1371/journal.pone.0017005
– volume: 7
  start-page: 13
  year: 2013
  ident: BFnbt2891_CR15
  publication-title: J. Biol. Eng.
  doi: 10.1186/1754-1611-7-13
– volume: 6
  start-page: 1
  year: 2012
  ident: BFnbt2891_CR24
  publication-title: J. Biol. Eng.
  doi: 10.1186/1754-1611-6-1
– volume: 85
  start-page: 433
  year: 2004
  ident: BFnbt2891_CR33
  publication-title: Prog. Biophys. Mol. Biol.
  doi: 10.1016/j.pbiomolbio.2004.01.004
– volume: 5
  start-page: e1000529
  year: 2009
  ident: BFnbt2891_CR29
  publication-title: PLoS Comput. Biol.
  doi: 10.1371/journal.pcbi.1000529
– ident: BFnbt2891_CR13
– volume: 28
  start-page: 935
  year: 2010
  ident: BFnbt2891_CR30
  publication-title: Nat. Biotechnol.
  doi: 10.1038/nbt.1666
– volume: 6
  start-page: R44
  year: 2005
  ident: BFnbt2891_CR18
  publication-title: Genome Biol.
  doi: 10.1186/gb-2005-6-5-r44
– volume: 44
  start-page: 87
  year: 2011
  ident: BFnbt2891_CR19
  publication-title: J. Biomed. Inform.
  doi: 10.1016/j.jbi.2010.03.002
– volume: 10
  start-page: 859
  year: 2009
  ident: BFnbt2891_CR6
  publication-title: Nat. Rev. Genet.
  doi: 10.1038/nrg2697
– volume: 7
  start-page: 285
  year: 2006
  ident: BFnbt2891_CR35
  publication-title: BMC Bioinformatics
  doi: 10.1186/1471-2105-7-285
– volume: 25
  start-page: 2848
  year: 2009
  ident: BFnbt2891_CR27
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btp457
– volume: 498
  start-page: 97
  year: 2011
  ident: BFnbt2891_CR26
  publication-title: Methods Enzymol.
  doi: 10.1016/B978-0-12-385120-8.00005-X
– volume: 40
  start-page: e141
  year: 2012
  ident: BFnbt2891_CR28
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gks531
– volume: 19
  start-page: 524
  year: 2003
  ident: BFnbt2891_CR17
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btg015
– volume: 333
  start-page: 1244
  year: 2011
  ident: BFnbt2891_CR5
  publication-title: Science
  doi: 10.1126/science.1207084
– volume: 6
  start-page: e22490
  year: 2011
  ident: BFnbt2891_CR38
  publication-title: PLoS ONE
  doi: 10.1371/journal.pone.0022490
– ident: BFnbt2891_CR20
– volume: 34
  start-page: D689
  year: 2006
  ident: BFnbt2891_CR32
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkj092
– reference: 23651006 - ACS Synth Biol. 2012 Jan 20;1(1):14-21
– reference: 25574632 - Nat Biotechnol. 2015 Jan;33(1):25
– reference: 19298678 - J Biol Eng. 2009 Mar 20;3:4
– reference: 21885772 - Science. 2011 Sep 2;333(6047):1244-8
– reference: 20395970 - Nat Rev Genet. 2010 May;11(5):367-79
– reference: 16756672 - BMC Bioinformatics. 2006 Jun 06;7:285
– reference: 19399430 - Methods Mol Biol. 2009;500:113-67
– reference: 19628507 - Bioinformatics. 2009 Nov 1;25(21):2848-9
– reference: 22688678 - Nat Rev Genet. 2012 Jun 12;13(7):455-68
– reference: 18612302 - Nat Biotechnol. 2008 Jul;26(7):787-93
– reference: 21390321 - PLoS One. 2011 Feb 24;6(2):e17005
– reference: 19874625 - J Biol Eng. 2009 Oct 29;3:19
– reference: 12611808 - Bioinformatics. 2003 Mar 1;19(4):524-31
– reference: 21850228 - PLoS One. 2011;6(8):e22490
– reference: 22373390 - J Biol Eng. 2012 Feb 28;6(1):1
– reference: 19898500 - Nat Rev Genet. 2009 Dec;10(12):859-71
– reference: 15142756 - Prog Biophys Mol Biol. 2004 Jun-Jul;85(2-3):433-50
– reference: 19668183 - Nat Biotechnol. 2009 Aug;27(8):735-41
– reference: 20226267 - J Biomed Inform. 2011 Feb;44(1):87-93
– reference: 25574630 - Nat Biotechnol. 2015 Jan;33(1):24-5
– reference: 23663447 - J Biol Eng. 2013 May 10;7(1):13
– reference: 21559524 - PLoS One. 2011 Apr 29;6(4):e18882
– reference: 10659857 - Nature. 2000 Jan 20;403(6767):339-42
– reference: 23540289 - Annu Rev Chem Biomol Eng. 2013;4:259-88
– reference: 15892872 - Genome Biol. 2005;6(5):R44
– reference: 23651286 - ACS Synth Biol. 2012 Aug 17;1(8):317-31
– reference: 21296753 - Bioinformatics. 2011 Apr 1;27(7):973-9
– reference: 20829833 - Nat Biotechnol. 2010 Sep;28(9):935-42
– reference: 22718978 - Nucleic Acids Res. 2012 Oct;40(18):e141
– reference: 16381960 - Nucleic Acids Res. 2006 Jan 1;34(Database issue):D689-91
– reference: 19816554 - PLoS Comput Biol. 2009 Oct;5(10):e1000529
– reference: 3162770 - Proc Natl Acad Sci U S A. 1988 Apr;85(8):2444-8
– reference: 21221092 - Nat Biotechnol. 2011 Jan;29(1):22; discussion 22-3
– reference: 19801975 - Nat Biotechnol. 2009 Oct;27(10):946-50
– reference: 21601675 - Methods Enzymol. 2011;498:97-135
SSID ssj0006466
Score 2.5541942
SecondaryResourceType review_article
Snippet The synthetic biology research community describes a standard language for exchanging designs of biological 'parts'. The re-use of previously validated designs...
The re-use of previously validated designs is critical to the evolution of synthetic biology from a research discipline to an engineering practice. Here we...
SourceID proquest
gale
pubmed
crossref
springer
SourceType Aggregation Database
Index Database
Enrichment Source
Publisher
StartPage 545
SubjectTerms 631/114/2416
Agriculture
Bioinformatics
Biological research
Biology, Experimental
Biomedical Engineering/Biotechnology
Biomedicine
Biotechnology
Communication in science
Documentation
Information Dissemination - methods
Internationality
Life Sciences
perspective
Reference Standards
Research Design - standards
Software - standards
Synthetic biology
Synthetic Biology - standards
Terminology as Topic
Vocabulary, Controlled
Title The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology
URI https://link.springer.com/article/10.1038/nbt.2891
https://www.ncbi.nlm.nih.gov/pubmed/24911500
https://www.proquest.com/docview/1534303704
https://www.proquest.com/docview/1534790414
https://www.proquest.com/docview/1554950299
Volume 32
WOSCitedRecordID wos000337233800016&url=https%3A%2F%2Fcvtisr.summon.serialssolutions.com%2F%23%21%2Fsearch%3Fho%3Df%26include.ft.matches%3Dt%26l%3Dnull%26q%3D
hasFullText 1
inHoldings 1
isFullTextHit
isPrint
journalDatabaseRights – providerCode: PRVPQU
  databaseName: Biological Science Database
  customDbUrl:
  eissn: 1546-1696
  dateEnd: 20181231
  omitProxy: false
  ssIdentifier: ssj0006466
  issn: 1087-0156
  databaseCode: M7P
  dateStart: 19970101
  isFulltext: true
  titleUrlDefault: http://search.proquest.com/biologicalscijournals
  providerName: ProQuest
– providerCode: PRVPQU
  databaseName: Engineering Database (subscription)
  customDbUrl:
  eissn: 1546-1696
  dateEnd: 20181231
  omitProxy: false
  ssIdentifier: ssj0006466
  issn: 1087-0156
  databaseCode: M7S
  dateStart: 19970101
  isFulltext: true
  titleUrlDefault: http://search.proquest.com
  providerName: ProQuest
– providerCode: PRVPQU
  databaseName: Health & Medical Collection (ProQuest)
  customDbUrl:
  eissn: 1546-1696
  dateEnd: 20181231
  omitProxy: false
  ssIdentifier: ssj0006466
  issn: 1087-0156
  databaseCode: 7X7
  dateStart: 19970101
  isFulltext: true
  titleUrlDefault: https://search.proquest.com/healthcomplete
  providerName: ProQuest
– providerCode: PRVPQU
  databaseName: ProQuest Central
  customDbUrl:
  eissn: 1546-1696
  dateEnd: 20181231
  omitProxy: false
  ssIdentifier: ssj0006466
  issn: 1087-0156
  databaseCode: BENPR
  dateStart: 19970101
  isFulltext: true
  titleUrlDefault: https://www.proquest.com/central
  providerName: ProQuest
– providerCode: PRVPQU
  databaseName: Research Library
  customDbUrl:
  eissn: 1546-1696
  dateEnd: 20181231
  omitProxy: false
  ssIdentifier: ssj0006466
  issn: 1087-0156
  databaseCode: M2O
  dateStart: 19970101
  isFulltext: true
  titleUrlDefault: https://search.proquest.com/pqrl
  providerName: ProQuest
– providerCode: PRVPQU
  databaseName: Science Database (ProQuest)
  customDbUrl:
  eissn: 1546-1696
  dateEnd: 20181231
  omitProxy: false
  ssIdentifier: ssj0006466
  issn: 1087-0156
  databaseCode: M2P
  dateStart: 19970101
  isFulltext: true
  titleUrlDefault: https://search.proquest.com/sciencejournals
  providerName: ProQuest
link http://cvtisr.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwpV3db9MwED-xDRA88FG-CqMyCDR4iJbETuI8oQ1tAmlrqxVQ3yLHH9MklI6lBfW_5-w4oa3QhMSLpTQ_q3Z8Pt-X7wDeiCxSNJRhgMqPChg3ZcATLQJTmlCmTKtMKFdsIhsO-XSaj73BrfZhlS1PdIxazaS1ke_jzmTIbrOQfbj8EdiqUda76ktobMGOzZJAXejeuOPEaeOrjEJuwyuTtE0-S_l-Vdq0rXm0dhxtMuWVU2nDTepOn-P7_zvuB3DPy53koCGUh3BDVz241VSiXPbg7kpewh7cPvUe90fwC-mITJYVyonYk_gOxMahkBNv6yTvJoejk_fE3-qriSCyuXcyX5LWVkFQOm5_tmbC6pwoFz1Sk4uK1N0_-KxQj-Hr8dGXj58CX6whkCjkzQOjuYo5KnexUDpiOqYijjOZJEgDkZEmMiZBUYLFkeQUhUidMBUqJURJU5OolD6B7WpW6WdAYiQSlTNhIgQlVItU5yWVzOQyESHP-7DXrlkhfSZzW1Dje-E86pQXuLqFXd0-vOqQl032jr9g3tplL3zRT2xqaxapz8WirosDmtl6zCiV9uG1w9mkGZWNymkAn0ff_gE0OVsD7XmQmeG4pfA3IXD2NhnXGnJ3DYlbX66_bmmu8KynLv4QHM6-e2172nC6Ss8WDSbLQxZdi0lQeQ5RXOnD02YbdN8QdXarSYQ43XZfrAxg4wM_v36UL-AOCqGsCb_bhe351UK_hJvy5_yivhrAVjbNXMsHsHN4NByf4dNpPHLteOA2vGsnvwFr41nx
linkProvider ProQuest
linkToHtml http://cvtisr.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMw1V1bb9MwFD4a4_7ApeNSGGAQ08ZDtMSxE-cBoXGZVq3rJjrQ3oLryzQJpWNpmfqn-I0cJ05pKzTxsgde-tB8bm3n3Gx_PgfgtUwjHYcqDHDxowMm7CAQ3MjADmyoEmZ0KnVVbCLt9cTRUXawBL-auzCOVtnYxMpQ66Fye-SbqJkMzW0asnenPwJXNcqdrjYlNGqx2DWTc1yylW87H_H9rlG6_enww07gqwoECqORUWCN0FTgKoRKbSJmaCwpTRXn2NnIKhtZy9HnMRopEWO0YzjTodZSDuLEcp3E-LtX4CqGEVRUVMGDqeVP6rPRKBSOzsmTJtltLDaLgUsTm0Vz7m_RCcx4wYVj2crbbd_93-bpHtzxcTXZqhXhPiyZogXX60qbkxbcnsm72IIbe55RsALnqCekPykwDsaWxDcgjmdDun4vl2z03-933xB_a7Ekkqj6Xs1oQpq9GILRf_O12wYtjomu2DElOSlIOf0Hn_XqAXy5lOl4CMvFsDCPgVBUAp0xaSME8djIxGSDWDGbKS5DkbVhvZGRXPlM7a5gyPe8YgzEIkdpyp00teHlFHlaZyf5C2bNiVnui5riR-m2fcpjOS7LfCtOXb1pjLrb8KrCuaQghWMd1YDO_td_APU_z4HWPcgOsd9K-pseOHqXbGwOuTqHRNOm5h83Mp5701rmfwQcRz997Fo6umBhhuMak2Yhiy7EcJbxEMOxNjyq1W46h5RlbqUU4nAbPZzpwMIEP7m4ly_g5s7hXjfvdnq7T-EWBtysphquwvLobGyewTX1c3RSnj2vjAmBb5etlb8B2JWwsQ
linkToPdf http://cvtisr.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMw1V1Jb9NAFH4qBSo4sIQtUGBAVKUHK15mvBwQKpSIqCGNCKDe3PEsVSXklDqhyl_j1_HGHps4QhWXHrjkEH-TzIzfPm_eA3jFI08GrnAddH6kQ2OdOTFT3NGZdkVIlYy4LJtNRKNRfHiYjNfgV30XxqRV1jKxFNRyKkyMvIecSVHcRi7taZsWMd7rvz394ZgOUuaktW6nUZHIvlqco_tWvBns4bve8v3-hy_vPzq2w4Aj0DKZOVrF0o_RI_G5VB5VfsB9PxKM4cQ9LbSnNUP9R31PxAFaPopR6UrJeRaEmskwwN-9AlcjU7S8TBscN1ogrM5JPTc2qZ0srAvfBnEvz0zJ2MRrqcJVhbCkEVeOaEvN17_9P-_ZHbhl7W2yWzHIXVhTeQeuVx04Fx24uVSPsQMbn2ymwT04R_4hk0WO9jGOJHYAMfk3ZGhjvOT15N3BcIfY24wF4URU921mC1LHaAh6BfXXJjyaHxNZZs0U5CQnRfMPthrWffh6KdvxANbzaa4eAfGROWRCufYQxALFQ5VkgaA6EYy7cdKF7ZpeUmEruJtGIt_TMpMgiFOkrNRQVhdeNMjTqmrJXzBbhuRS2-wUPwoTDiqO-bwo0t0gMn2o0RrvwssSZ4qF5IaEKsDg4Ns_gCafW6BtC9JTnLfg9gYIrt4UIWshN1tIFHmi_bim99SK3CL9Q-y4-uaxGWnSCHM1nVeYKHGpdyGG0YS5aKZ14WHFgs0e-jQxHpSLy615cmkCKxv8-OJZPocNZMZ0OBjtP4EbaIfTKgNxE9ZnZ3P1FK6Jn7OT4uxZKVcIHF02U_4GiGu5bg
openUrl ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=The+Synthetic+Biology+Open+Language+%28SBOL%29+provides+a+community+standard+for+communicating+designs+in+synthetic+biology&rft.jtitle=Nature+biotechnology&rft.au=Galdzicki%2C+Michal&rft.au=Clancy%2C+Kevin+P&rft.au=Oberortner%2C+Ernst&rft.au=Pocock%2C+Matthew&rft.date=2014-06-01&rft.pub=Nature+Publishing+Group+US&rft.issn=1087-0156&rft.eissn=1546-1696&rft.volume=32&rft.issue=6&rft.spage=545&rft.epage=550&rft_id=info:doi/10.1038%2Fnbt.2891&rft.externalDocID=10_1038_nbt_2891
thumbnail_l http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=1087-0156&client=summon
thumbnail_m http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=1087-0156&client=summon
thumbnail_s http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=1087-0156&client=summon