Comparatively Evolution and Expression Analysis of GRF Transcription Factor Genes in Seven Plant Species

Growth regulatory factors (GRF) are plant-specific transcription factors that play pivotal roles in growth and various abiotic stresses regulation. However, adaptive evolution of GRF gene family in land plants are still being elucidated. Here, we performed the evolutionary and expression analysis of...

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Published in:Plants (Basel) Vol. 12; no. 15; p. 2790
Main Authors: Cheng, Zhihan, Wen, Shiqi, Wu, Yuke, Shang, Lina, Wu, Lin, Lyu, Dianqiu, Yu, Hongtao, Wang, Jichun, Jian, Hongju
Format: Journal Article
Language:English
Published: Switzerland MDPI AG 27.07.2023
MDPI
Subjects:
Abiotic stress
Amino acids
Analysis
Biological evolution
Cladistic analysis
Comparative analysis
DNA binding proteins
Evolution
evolutionary adaptation
Evolutionary biology
Evolutionary genetics
expression pattern
flowering
Flowers & plants
Gene expression
Genes
Genetic aspects
Genomes
GIF
GRF
Heat
High temperature
interaction
Metabolism
Phylogenetics
Phylogeny
Physiological aspects
Plant genetics
Plant growth
Plant species
Plants
Polyethylene glycol
Proteins
Somatotropin releasing hormone
Stress (Physiology)
Stresses
Structural analysis
Transcription factors
China
interaction
expression pattern
GRF
evolution
GIF
abiotic stress
ISSN:2223-7747, 2223-7747
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Abstract Growth regulatory factors (GRF) are plant-specific transcription factors that play pivotal roles in growth and various abiotic stresses regulation. However, adaptive evolution of GRF gene family in land plants are still being elucidated. Here, we performed the evolutionary and expression analysis of GRF gene family from seven representative species. Extensive phylogenetic analyses and gene structure analysis revealed that the number of genes, QLQ domain and WRC domain identified in higher plants was significantly greater than those identified in lower plants. Besides, dispersed duplication and WGD/segmental duplication effectively promoted expansion of the GRF gene family. The expression patterns of GRF gene family and target genes were found in multiple floral organs and abundant in actively growing tissues. They were also found to be particularly expressed in response to various abiotic stresses, with stress-related elements in promoters, implying potential roles in floral development and abiotic stress. Our analysis in GRF gene family interaction network indicated the similar results that GRFs resist to abiotic stresses with the cooperation of other transcription factors like GIFs. This study provides insights into evolution in the GRF gene family, together with expression patterns valuable for future functional researches of plant abiotic stress biology.
AbstractList Growth regulatory factors (GRF) are plant-specific transcription factors that play pivotal roles in growth and various abiotic stresses regulation. However, adaptive evolution of GRF gene family in land plants are still being elucidated. Here, we performed the evolutionary and expression analysis of GRF gene family from seven representative species. Extensive phylogenetic analyses and gene structure analysis revealed that the number of genes, QLQ domain and WRC domain identified in higher plants was significantly greater than those identified in lower plants. Besides, dispersed duplication and WGD/segmental duplication effectively promoted expansion of the GRF gene family. The expression patterns of GRF gene family and target genes were found in multiple floral organs and abundant in actively growing tissues. They were also found to be particularly expressed in response to various abiotic stresses, with stress-related elements in promoters, implying potential roles in floral development and abiotic stress. Our analysis in GRF gene family interaction network indicated the similar results that GRFs resist to abiotic stresses with the cooperation of other transcription factors like GIFs. This study provides insights into evolution in the GRF gene family, together with expression patterns valuable for future functional researches of plant abiotic stress biology.
Growth regulatory factors (GRF) are plant-specific transcription factors that play pivotal roles in growth and various abiotic stresses regulation. However, adaptive evolution of GRF gene family in land plants are still being elucidated. Here, we performed the evolutionary and expression analysis of GRF gene family from seven representative species. Extensive phylogenetic analyses and gene structure analysis revealed that the number of genes, QLQ domain and WRC domain identified in higher plants was significantly greater than those identified in lower plants. Besides, dispersed duplication and WGD/segmental duplication effectively promoted expansion of the GRF gene family. The expression patterns of GRF gene family and target genes were found in multiple floral organs and abundant in actively growing tissues. They were also found to be particularly expressed in response to various abiotic stresses, with stress-related elements in promoters, implying potential roles in floral development and abiotic stress. Our analysis in GRF gene family interaction network indicated the similar results that GRFs resist to abiotic stresses with the cooperation of other transcription factors like GIFs. This study provides insights into evolution in the GRF gene family, together with expression patterns valuable for future functional researches of plant abiotic stress biology.Growth regulatory factors (GRF) are plant-specific transcription factors that play pivotal roles in growth and various abiotic stresses regulation. However, adaptive evolution of GRF gene family in land plants are still being elucidated. Here, we performed the evolutionary and expression analysis of GRF gene family from seven representative species. Extensive phylogenetic analyses and gene structure analysis revealed that the number of genes, QLQ domain and WRC domain identified in higher plants was significantly greater than those identified in lower plants. Besides, dispersed duplication and WGD/segmental duplication effectively promoted expansion of the GRF gene family. The expression patterns of GRF gene family and target genes were found in multiple floral organs and abundant in actively growing tissues. They were also found to be particularly expressed in response to various abiotic stresses, with stress-related elements in promoters, implying potential roles in floral development and abiotic stress. Our analysis in GRF gene family interaction network indicated the similar results that GRFs resist to abiotic stresses with the cooperation of other transcription factors like GIFs. This study provides insights into evolution in the GRF gene family, together with expression patterns valuable for future functional researches of plant abiotic stress biology.
Audience Academic
Author Shang, Lina
Lyu, Dianqiu
Jian, Hongju
Wang, Jichun
Cheng, Zhihan
Yu, Hongtao
Wu, Yuke
Wen, Shiqi
Wu, Lin
AuthorAffiliation 1 Integrative Science Center of Germplasm Creation in Western China (CHONGQING) Science City, Southwest University, Chongqing 400715, China; czh010812@163.com (Z.C.); carnival@email.swu.edu.cn (S.W.); winkwu730@foxmail.com (Y.W.); cxldshanglina@163.com (L.S.); wulin2022@swu.edu.cn (L.W.); smallpotatoes@126.com (D.L.); wjchun@swu.edu.cn (J.W.)
5 Suihua Branch of Heilongjiang Academy of Agriculture Sciences, Suihua 152052, China; yuhongtao9900@163.com
2 College of Agronomy and Biotechnology, Southwest University, Chongqing 400715, China
4 Chongqing Key Laboratory of Biology and Genetic Breeding for Tuber and Root Crops, Chongqing 400715, China
3 State Cultivation Base of Crop Stress Biology for Southern Mountainous Land of Southwest University, Chongqing 400715, China
AuthorAffiliation_xml – name: 3 State Cultivation Base of Crop Stress Biology for Southern Mountainous Land of Southwest University, Chongqing 400715, China
– name: 4 Chongqing Key Laboratory of Biology and Genetic Breeding for Tuber and Root Crops, Chongqing 400715, China
– name: 5 Suihua Branch of Heilongjiang Academy of Agriculture Sciences, Suihua 152052, China; yuhongtao9900@163.com
– name: 1 Integrative Science Center of Germplasm Creation in Western China (CHONGQING) Science City, Southwest University, Chongqing 400715, China; czh010812@163.com (Z.C.); carnival@email.swu.edu.cn (S.W.); winkwu730@foxmail.com (Y.W.); cxldshanglina@163.com (L.S.); wulin2022@swu.edu.cn (L.W.); smallpotatoes@126.com (D.L.); wjchun@swu.edu.cn (J.W.)
– name: 2 College of Agronomy and Biotechnology, Southwest University, Chongqing 400715, China
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BackLink https://www.ncbi.nlm.nih.gov/pubmed/37570944$$D View this record in MEDLINE/PubMed
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Issue 15
Keywords interaction
expression pattern
GRF
evolution
GIF
abiotic stress
Language English
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Snippet Growth regulatory factors (GRF) are plant-specific transcription factors that play pivotal roles in growth and various abiotic stresses regulation. However,...
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StartPage 2790
SubjectTerms Abiotic stress
Amino acids
Analysis
Biological evolution
Cladistic analysis
Comparative analysis
DNA binding proteins
Evolution
evolutionary adaptation
Evolutionary biology
Evolutionary genetics
expression pattern
flowering
Flowers & plants
Gene expression
Genes
Genetic aspects
Genomes
GIF
GRF
Heat
High temperature
interaction
Metabolism
Phylogenetics
Phylogeny
Physiological aspects
Plant genetics
Plant growth
Plant species
Plants
Polyethylene glycol
Proteins
Somatotropin releasing hormone
Stress (Physiology)
Stresses
Structural analysis
Transcription factors
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Title Comparatively Evolution and Expression Analysis of GRF Transcription Factor Genes in Seven Plant Species
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