Comparatively Evolution and Expression Analysis of GRF Transcription Factor Genes in Seven Plant Species
Growth regulatory factors (GRF) are plant-specific transcription factors that play pivotal roles in growth and various abiotic stresses regulation. However, adaptive evolution of GRF gene family in land plants are still being elucidated. Here, we performed the evolutionary and expression analysis of...
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| Published in: | Plants (Basel) Vol. 12; no. 15; p. 2790 |
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| Abstract | Growth regulatory factors (GRF) are plant-specific transcription factors that play pivotal roles in growth and various abiotic stresses regulation. However, adaptive evolution of GRF gene family in land plants are still being elucidated. Here, we performed the evolutionary and expression analysis of GRF gene family from seven representative species. Extensive phylogenetic analyses and gene structure analysis revealed that the number of genes, QLQ domain and WRC domain identified in higher plants was significantly greater than those identified in lower plants. Besides, dispersed duplication and WGD/segmental duplication effectively promoted expansion of the GRF gene family. The expression patterns of GRF gene family and target genes were found in multiple floral organs and abundant in actively growing tissues. They were also found to be particularly expressed in response to various abiotic stresses, with stress-related elements in promoters, implying potential roles in floral development and abiotic stress. Our analysis in GRF gene family interaction network indicated the similar results that GRFs resist to abiotic stresses with the cooperation of other transcription factors like GIFs. This study provides insights into evolution in the GRF gene family, together with expression patterns valuable for future functional researches of plant abiotic stress biology. |
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| AbstractList | Growth regulatory factors (GRF) are plant-specific transcription factors that play pivotal roles in growth and various abiotic stresses regulation. However, adaptive evolution of GRF gene family in land plants are still being elucidated. Here, we performed the evolutionary and expression analysis of GRF gene family from seven representative species. Extensive phylogenetic analyses and gene structure analysis revealed that the number of genes, QLQ domain and WRC domain identified in higher plants was significantly greater than those identified in lower plants. Besides, dispersed duplication and WGD/segmental duplication effectively promoted expansion of the GRF gene family. The expression patterns of GRF gene family and target genes were found in multiple floral organs and abundant in actively growing tissues. They were also found to be particularly expressed in response to various abiotic stresses, with stress-related elements in promoters, implying potential roles in floral development and abiotic stress. Our analysis in GRF gene family interaction network indicated the similar results that GRFs resist to abiotic stresses with the cooperation of other transcription factors like GIFs. This study provides insights into evolution in the GRF gene family, together with expression patterns valuable for future functional researches of plant abiotic stress biology. Growth regulatory factors (GRF) are plant-specific transcription factors that play pivotal roles in growth and various abiotic stresses regulation. However, adaptive evolution of GRF gene family in land plants are still being elucidated. Here, we performed the evolutionary and expression analysis of GRF gene family from seven representative species. Extensive phylogenetic analyses and gene structure analysis revealed that the number of genes, QLQ domain and WRC domain identified in higher plants was significantly greater than those identified in lower plants. Besides, dispersed duplication and WGD/segmental duplication effectively promoted expansion of the GRF gene family. The expression patterns of GRF gene family and target genes were found in multiple floral organs and abundant in actively growing tissues. They were also found to be particularly expressed in response to various abiotic stresses, with stress-related elements in promoters, implying potential roles in floral development and abiotic stress. Our analysis in GRF gene family interaction network indicated the similar results that GRFs resist to abiotic stresses with the cooperation of other transcription factors like GIFs. This study provides insights into evolution in the GRF gene family, together with expression patterns valuable for future functional researches of plant abiotic stress biology.Growth regulatory factors (GRF) are plant-specific transcription factors that play pivotal roles in growth and various abiotic stresses regulation. However, adaptive evolution of GRF gene family in land plants are still being elucidated. Here, we performed the evolutionary and expression analysis of GRF gene family from seven representative species. Extensive phylogenetic analyses and gene structure analysis revealed that the number of genes, QLQ domain and WRC domain identified in higher plants was significantly greater than those identified in lower plants. Besides, dispersed duplication and WGD/segmental duplication effectively promoted expansion of the GRF gene family. The expression patterns of GRF gene family and target genes were found in multiple floral organs and abundant in actively growing tissues. They were also found to be particularly expressed in response to various abiotic stresses, with stress-related elements in promoters, implying potential roles in floral development and abiotic stress. Our analysis in GRF gene family interaction network indicated the similar results that GRFs resist to abiotic stresses with the cooperation of other transcription factors like GIFs. This study provides insights into evolution in the GRF gene family, together with expression patterns valuable for future functional researches of plant abiotic stress biology. |
| Audience | Academic |
| Author | Shang, Lina Lyu, Dianqiu Jian, Hongju Wang, Jichun Cheng, Zhihan Yu, Hongtao Wu, Yuke Wen, Shiqi Wu, Lin |
| AuthorAffiliation | 1 Integrative Science Center of Germplasm Creation in Western China (CHONGQING) Science City, Southwest University, Chongqing 400715, China; czh010812@163.com (Z.C.); carnival@email.swu.edu.cn (S.W.); winkwu730@foxmail.com (Y.W.); cxldshanglina@163.com (L.S.); wulin2022@swu.edu.cn (L.W.); smallpotatoes@126.com (D.L.); wjchun@swu.edu.cn (J.W.) 5 Suihua Branch of Heilongjiang Academy of Agriculture Sciences, Suihua 152052, China; yuhongtao9900@163.com 2 College of Agronomy and Biotechnology, Southwest University, Chongqing 400715, China 4 Chongqing Key Laboratory of Biology and Genetic Breeding for Tuber and Root Crops, Chongqing 400715, China 3 State Cultivation Base of Crop Stress Biology for Southern Mountainous Land of Southwest University, Chongqing 400715, China |
| AuthorAffiliation_xml | – name: 3 State Cultivation Base of Crop Stress Biology for Southern Mountainous Land of Southwest University, Chongqing 400715, China – name: 4 Chongqing Key Laboratory of Biology and Genetic Breeding for Tuber and Root Crops, Chongqing 400715, China – name: 5 Suihua Branch of Heilongjiang Academy of Agriculture Sciences, Suihua 152052, China; yuhongtao9900@163.com – name: 1 Integrative Science Center of Germplasm Creation in Western China (CHONGQING) Science City, Southwest University, Chongqing 400715, China; czh010812@163.com (Z.C.); carnival@email.swu.edu.cn (S.W.); winkwu730@foxmail.com (Y.W.); cxldshanglina@163.com (L.S.); wulin2022@swu.edu.cn (L.W.); smallpotatoes@126.com (D.L.); wjchun@swu.edu.cn (J.W.) – name: 2 College of Agronomy and Biotechnology, Southwest University, Chongqing 400715, China |
| Author_xml | – sequence: 1 givenname: Zhihan surname: Cheng fullname: Cheng, Zhihan – sequence: 2 givenname: Shiqi surname: Wen fullname: Wen, Shiqi – sequence: 3 givenname: Yuke surname: Wu fullname: Wu, Yuke – sequence: 4 givenname: Lina surname: Shang fullname: Shang, Lina – sequence: 5 givenname: Lin surname: Wu fullname: Wu, Lin – sequence: 6 givenname: Dianqiu orcidid: 0000-0003-4543-5828 surname: Lyu fullname: Lyu, Dianqiu – sequence: 7 givenname: Hongtao surname: Yu fullname: Yu, Hongtao – sequence: 8 givenname: Jichun surname: Wang fullname: Wang, Jichun – sequence: 9 givenname: Hongju surname: Jian fullname: Jian, Hongju |
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| Keywords | interaction expression pattern GRF evolution GIF abiotic stress |
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