Probabilistic cell-type assignment of single-cell RNA-seq for tumor microenvironment profiling

Single-cell RNA sequencing has enabled the decomposition of complex tissues into functionally distinct cell types. Often, investigators wish to assign cells to cell types through unsupervised clustering followed by manual annotation or via 'mapping' to existing data. However, manual interp...

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Veröffentlicht in:Nature methods Jg. 16; H. 10; S. 1007 - 1015
Hauptverfasser: Zhang, Allen W, O'Flanagan, Ciara, Chavez, Elizabeth A, Lim, Jamie L P, Ceglia, Nicholas, McPherson, Andrew, Wiens, Matt, Walters, Pascale, Chan, Tim, Hewitson, Brittany, Lai, Daniel, Mottok, Anja, Sarkozy, Clementine, Chong, Lauren, Aoki, Tomohiro, Wang, Xuehai, Weng, Andrew P, McAlpine, Jessica N, Aparicio, Samuel, Steidl, Christian, Campbell, Kieran R, Shah, Sohrab P
Format: Journal Article
Sprache:Englisch
Veröffentlicht: United States Nature Publishing Group 01.10.2019
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ISSN:1548-7091, 1548-7105, 1548-7105
Online-Zugang:Volltext
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