Surveillance of Enterococcus spp. reveals distinct species and antimicrobial resistance diversity across a One-Health continuum

For a One-Health investigation of antimicrobial resistance (AMR) in Enterococcus spp., isolates from humans and beef cattle along with abattoirs, manured fields, natural streams, and wastewater from both urban and cattle feedlot sources were collected over two years. Species identification of Entero...

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Vydáno v:Scientific reports Ročník 10; číslo 1; s. 3937
Hlavní autoři: Zaheer, Rahat, Cook, Shaun R., Barbieri, Ruth, Goji, Noriko, Cameron, Andrew, Petkau, Aaron, Polo, Rodrigo Ortega, Tymensen, Lisa, Stamm, Courtney, Song, Jiming, Hannon, Sherry, Jones, Tineke, Church, Deirdre, Booker, Calvin W., Amoako, Kingsley, Van Domselaar, Gary, Read, Ron R., McAllister, Tim A.
Médium: Journal Article
Jazyk:angličtina
Vydáno: London Nature Publishing Group UK 03.03.2020
Nature Publishing Group
Témata:
631/326
631/326/22
631/326/22/1434
Abattoirs
Anti-Bacterial Agents - pharmacology
Antibiotic resistance
Antibiotics
Antimicrobial agents
Antimicrobial resistance
Beef cattle
beta-Lactam Resistance - genetics
Cattle
Clinical isolates
Drug resistance
Drug Resistance, Bacterial - genetics
Enterococcus
Enterococcus - drug effects
Enterococcus - genetics
Enterococcus - pathogenicity
Enterococcus faecalis - drug effects
Enterococcus faecalis - genetics
Enterococcus faecalis - pathogenicity
Enterococcus faecium - drug effects
Enterococcus faecium - genetics
Enterococcus faecium - pathogenicity
Feedlots
Genomes
Humanities and Social Sciences
Humans
Macrolides - pharmacology
multidisciplinary
Multidrug resistance
Natural streams
Phylogeny
Quinolones
Quinolones - pharmacology
Science
Science (multidisciplinary)
Species
Species diversity
Streams
Tetracyclines
Tetracyclines - pharmacology
Vancomycin
Virulence
Wastewater
Whole Genome Sequencing
β-Lactam antibiotics
ISSN:2045-2322, 2045-2322
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Abstract For a One-Health investigation of antimicrobial resistance (AMR) in Enterococcus spp., isolates from humans and beef cattle along with abattoirs, manured fields, natural streams, and wastewater from both urban and cattle feedlot sources were collected over two years. Species identification of Enterococcus revealed distinct associations across the continuum. Of the 8430 isolates collected, Enterococcus faecium and Enterococcus faecalis were the main species in urban wastewater (90%) and clinical human isolates (99%); Enterococcus hirae predominated in cattle (92%) and feedlot catch-basins (60%), whereas natural streams harbored environmental Enterococcus spp. Whole-genome sequencing of E. faecalis (n = 366 isolates) and E. faecium (n = 342 isolates), revealed source clustering of isolates, indicative of distinct adaptation to their respective environments. Phenotypic resistance to tetracyclines and macrolides encoded by tet(M) and erm(B) respectively, was prevalent among Enterococcus spp. regardless of source. For E. faecium from cattle, resistance to β-lactams and quinolones was observed among 3% and 8% of isolates respectively, compared to 76% and 70% of human clinical isolates. Clinical vancomycin-resistant E. faecium exhibited high rates of multi-drug resistance, with resistance to all β-lactam, macrolides, and quinolones tested. Differences in the AMR profiles among isolates reflected antimicrobial use practices in each sector of the One-Health continuum.
AbstractList For a One-Health investigation of antimicrobial resistance (AMR) in Enterococcus spp., isolates from humans and beef cattle along with abattoirs, manured fields, natural streams, and wastewater from both urban and cattle feedlot sources were collected over two years. Species identification of Enterococcus revealed distinct associations across the continuum. Of the 8430 isolates collected, Enterococcus faecium and Enterococcus faecalis were the main species in urban wastewater (90%) and clinical human isolates (99%); Enterococcus hirae predominated in cattle (92%) and feedlot catch-basins (60%), whereas natural streams harbored environmental Enterococcus spp. Whole-genome sequencing of E. faecalis (n = 366 isolates) and E. faecium (n = 342 isolates), revealed source clustering of isolates, indicative of distinct adaptation to their respective environments. Phenotypic resistance to tetracyclines and macrolides encoded by tet(M) and erm(B) respectively, was prevalent among Enterococcus spp. regardless of source. For E. faecium from cattle, resistance to β-lactams and quinolones was observed among 3% and 8% of isolates respectively, compared to 76% and 70% of human clinical isolates. Clinical vancomycin-resistant E. faecium exhibited high rates of multi-drug resistance, with resistance to all β-lactam, macrolides, and quinolones tested. Differences in the AMR profiles among isolates reflected antimicrobial use practices in each sector of the One-Health continuum.
For a One-Health investigation of antimicrobial resistance (AMR) in Enterococcus spp., isolates from humans and beef cattle along with abattoirs, manured fields, natural streams, and wastewater from both urban and cattle feedlot sources were collected over two years. Species identification of Enterococcus revealed distinct associations across the continuum. Of the 8430 isolates collected, Enterococcus faecium and Enterococcus faecalis were the main species in urban wastewater (90%) and clinical human isolates (99%); Enterococcus hirae predominated in cattle (92%) and feedlot catch-basins (60%), whereas natural streams harbored environmental Enterococcus spp. Whole-genome sequencing of E. faecalis (n = 366 isolates) and E. faecium (n = 342 isolates), revealed source clustering of isolates, indicative of distinct adaptation to their respective environments. Phenotypic resistance to tetracyclines and macrolides encoded by tet(M) and erm(B) respectively, was prevalent among Enterococcus spp. regardless of source. For E. faecium from cattle, resistance to β-lactams and quinolones was observed among 3% and 8% of isolates respectively, compared to 76% and 70% of human clinical isolates. Clinical vancomycin-resistant E. faecium exhibited high rates of multi-drug resistance, with resistance to all β-lactam, macrolides, and quinolones tested. Differences in the AMR profiles among isolates reflected antimicrobial use practices in each sector of the One-Health continuum.
For a One-Health investigation of antimicrobial resistance (AMR) in Enterococcus spp., isolates from humans and beef cattle along with abattoirs, manured fields, natural streams, and wastewater from both urban and cattle feedlot sources were collected over two years. Species identification of Enterococcus revealed distinct associations across the continuum. Of the 8430 isolates collected, Enterococcus faecium and Enterococcus faecalis were the main species in urban wastewater (90%) and clinical human isolates (99%); Enterococcus hirae predominated in cattle (92%) and feedlot catch-basins (60%), whereas natural streams harbored environmental Enterococcus spp. Whole-genome sequencing of E. faecalis (n = 366 isolates) and E. faecium (n = 342 isolates), revealed source clustering of isolates, indicative of distinct adaptation to their respective environments. Phenotypic resistance to tetracyclines and macrolides encoded by tet(M) and erm(B) respectively, was prevalent among Enterococcus spp. regardless of source. For E. faecium from cattle, resistance to β-lactams and quinolones was observed among 3% and 8% of isolates respectively, compared to 76% and 70% of human clinical isolates. Clinical vancomycin-resistant E. faecium exhibited high rates of multi-drug resistance, with resistance to all β-lactam, macrolides, and quinolones tested. Differences in the AMR profiles among isolates reflected antimicrobial use practices in each sector of the One-Health continuum.For a One-Health investigation of antimicrobial resistance (AMR) in Enterococcus spp., isolates from humans and beef cattle along with abattoirs, manured fields, natural streams, and wastewater from both urban and cattle feedlot sources were collected over two years. Species identification of Enterococcus revealed distinct associations across the continuum. Of the 8430 isolates collected, Enterococcus faecium and Enterococcus faecalis were the main species in urban wastewater (90%) and clinical human isolates (99%); Enterococcus hirae predominated in cattle (92%) and feedlot catch-basins (60%), whereas natural streams harbored environmental Enterococcus spp. Whole-genome sequencing of E. faecalis (n = 366 isolates) and E. faecium (n = 342 isolates), revealed source clustering of isolates, indicative of distinct adaptation to their respective environments. Phenotypic resistance to tetracyclines and macrolides encoded by tet(M) and erm(B) respectively, was prevalent among Enterococcus spp. regardless of source. For E. faecium from cattle, resistance to β-lactams and quinolones was observed among 3% and 8% of isolates respectively, compared to 76% and 70% of human clinical isolates. Clinical vancomycin-resistant E. faecium exhibited high rates of multi-drug resistance, with resistance to all β-lactam, macrolides, and quinolones tested. Differences in the AMR profiles among isolates reflected antimicrobial use practices in each sector of the One-Health continuum.
ArticleNumber 3937
Author Church, Deirdre
Zaheer, Rahat
Jones, Tineke
Barbieri, Ruth
Amoako, Kingsley
Polo, Rodrigo Ortega
Song, Jiming
Cook, Shaun R.
Cameron, Andrew
Van Domselaar, Gary
Read, Ron R.
McAllister, Tim A.
Hannon, Sherry
Stamm, Courtney
Tymensen, Lisa
Goji, Noriko
Booker, Calvin W.
Petkau, Aaron
Author_xml – sequence: 1
  givenname: Rahat
  surname: Zaheer
  fullname: Zaheer, Rahat
  organization: Lethbridge Research and Development Centre, Agriculture and Agri-Food Canada
– sequence: 2
  givenname: Shaun R.
  surname: Cook
  fullname: Cook, Shaun R.
  organization: Alberta Agriculture and Forestry
– sequence: 3
  givenname: Ruth
  surname: Barbieri
  fullname: Barbieri, Ruth
  organization: Lethbridge Research and Development Centre, Agriculture and Agri-Food Canada
– sequence: 4
  givenname: Noriko
  surname: Goji
  fullname: Goji, Noriko
  organization: Canadian Food Inspection Agency, National Center for Animal Disease, Lethbridge Laboratory
– sequence: 5
  givenname: Andrew
  surname: Cameron
  fullname: Cameron, Andrew
  organization: Lethbridge Research and Development Centre, Agriculture and Agri-Food Canada
– sequence: 6
  givenname: Aaron
  surname: Petkau
  fullname: Petkau, Aaron
  organization: National Microbiology Laboratory, Public Health Agency of Canada
– sequence: 7
  givenname: Rodrigo Ortega
  surname: Polo
  fullname: Polo, Rodrigo Ortega
  organization: Lethbridge Research and Development Centre, Agriculture and Agri-Food Canada
– sequence: 8
  givenname: Lisa
  surname: Tymensen
  fullname: Tymensen, Lisa
  organization: Alberta Agriculture and Forestry
– sequence: 9
  givenname: Courtney
  surname: Stamm
  fullname: Stamm, Courtney
  organization: Feedlot Health Management Services
– sequence: 10
  givenname: Jiming
  surname: Song
  fullname: Song, Jiming
  organization: Feedlot Health Management Services
– sequence: 11
  givenname: Sherry
  surname: Hannon
  fullname: Hannon, Sherry
  organization: Feedlot Health Management Services
– sequence: 12
  givenname: Tineke
  surname: Jones
  fullname: Jones, Tineke
  organization: Lacombe Research and Development Centre, Agriculture and Agri-Food Canada
– sequence: 13
  givenname: Deirdre
  surname: Church
  fullname: Church, Deirdre
  organization: Cumming School of Medicine, University of Calgary, Calgary Laboratory Services (CLS), Alberta Health Services
– sequence: 14
  givenname: Calvin W.
  surname: Booker
  fullname: Booker, Calvin W.
  organization: Feedlot Health Management Services
– sequence: 15
  givenname: Kingsley
  surname: Amoako
  fullname: Amoako, Kingsley
  organization: Canadian Food Inspection Agency, National Center for Animal Disease, Lethbridge Laboratory
– sequence: 16
  givenname: Gary
  surname: Van Domselaar
  fullname: Van Domselaar, Gary
  organization: National Microbiology Laboratory, Public Health Agency of Canada
– sequence: 17
  givenname: Ron R.
  surname: Read
  fullname: Read, Ron R.
  organization: Cumming School of Medicine, University of Calgary
– sequence: 18
  givenname: Tim A.
  surname: McAllister
  fullname: McAllister, Tim A.
  email: tim.mcallister@canada.ca
  organization: Lethbridge Research and Development Centre, Agriculture and Agri-Food Canada
BackLink https://www.ncbi.nlm.nih.gov/pubmed/32127598$$D View this record in MEDLINE/PubMed
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Snippet For a One-Health investigation of antimicrobial resistance (AMR) in Enterococcus spp., isolates from humans and beef cattle along with abattoirs, manured...
For a One-Health investigation of antimicrobial resistance (AMR) in Enterococcus spp., isolates from humans and beef cattle along with abattoirs, manured...
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Publisher
StartPage 3937
SubjectTerms 631/326
631/326/22
631/326/22/1434
Abattoirs
Anti-Bacterial Agents - pharmacology
Antibiotic resistance
Antibiotics
Antimicrobial agents
Antimicrobial resistance
Beef cattle
beta-Lactam Resistance - genetics
Cattle
Clinical isolates
Drug resistance
Drug Resistance, Bacterial - genetics
Enterococcus
Enterococcus - drug effects
Enterococcus - genetics
Enterococcus - pathogenicity
Enterococcus faecalis - drug effects
Enterococcus faecalis - genetics
Enterococcus faecalis - pathogenicity
Enterococcus faecium - drug effects
Enterococcus faecium - genetics
Enterococcus faecium - pathogenicity
Feedlots
Genomes
Humanities and Social Sciences
Humans
Macrolides - pharmacology
multidisciplinary
Multidrug resistance
Natural streams
Phylogeny
Quinolones
Quinolones - pharmacology
Science
Science (multidisciplinary)
Species
Species diversity
Streams
Tetracyclines
Tetracyclines - pharmacology
Vancomycin
Virulence
Wastewater
Whole Genome Sequencing
β-Lactam antibiotics
Title Surveillance of Enterococcus spp. reveals distinct species and antimicrobial resistance diversity across a One-Health continuum
URI https://link.springer.com/article/10.1038/s41598-020-61002-5
https://www.ncbi.nlm.nih.gov/pubmed/32127598
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https://www.proquest.com/docview/2371143243
https://pubmed.ncbi.nlm.nih.gov/PMC7054549
Volume 10
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