Discordance between PAM50 intrinsic subtyping and immunohistochemistry in South African women with breast cancer

Purpose Breast cancer is a heterogeneous disease with different gene expression profiles, treatment options and outcomes. In South Africa, tumors are classified using immunohistochemistry. In high-income countries multiparameter genomic assays are being utilized with implications for tumor classific...

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Veröffentlicht in:Breast cancer research and treatment Jg. 199; H. 1; S. 1 - 12
Hauptverfasser: Dix-Peek, Thérèse, Phakathi, Boitumelo P., van den Berg, Eunice J., Dickens, Caroline, Augustine, Tanya N., Cubasch, Herbert, Neugut, Alfred I., Jacobson, Judith S., Joffe, Maureen, Ruff, Paul, Duarte, Raquel A. B.
Format: Journal Article
Sprache:Englisch
Veröffentlicht: New York Springer US 01.05.2023
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Springer Nature B.V
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ISSN:0167-6806, 1573-7217, 1573-7217
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Abstract Purpose Breast cancer is a heterogeneous disease with different gene expression profiles, treatment options and outcomes. In South Africa, tumors are classified using immunohistochemistry. In high-income countries multiparameter genomic assays are being utilized with implications for tumor classification and treatment. Methods In a cohort of 378 breast cancer patients from the SABCHO study, we investigated the concordance between tumor samples classified by IHC and the PAM50 gene assay. Results IHC classified patients as ER-positive (77.5%), PR-positive (70.6%), and HER2-positive (32.3%). These results, together with Ki67, were used as surrogates for intrinsic subtyping, and showed 6.9% IHC-A-clinical, 72.7% IHC-B-clinical, 5.3% IHC-HER2-clinical and 15.1% triple negative cancer (TNC). Typing using the PAM50 gave 19.3% luminal-A, 32.5% luminal-B, 23.5% HER2-enriched and 24.6% basal-like. The basal-like and TNC had the highest concordance, while the luminal-A and IHC-A group had the lowest concordance. By altering the cutoff for Ki67, and realigning the HER2/ER/PR-positive patients to IHC-HER2, we improved concordance with the intrinsic subtypes. Conclusion We suggest that the Ki67 be changed to a cutoff of 20–25% in our population to better reflect the luminal subtype classifications. This change would inform treatment options for breast cancer patients in settings where genomic assays are unaffordable.
AbstractList Purpose Breast cancer is a heterogeneous disease with different gene expression profiles, treatment options and outcomes. In South Africa, tumors are classified using immunohistochemistry. In high-income countries multiparameter genomic assays are being utilized with implications for tumor classification and treatment. Methods In a cohort of 378 breast cancer patients from the SABCHO study, we investigated the concordance between tumor samples classified by IHC and the PAM50 gene assay. Results IHC classified patients as ER-positive (77.5%), PR-positive (70.6%), and HER2-positive (32.3%). These results, together with Ki67, were used as surrogates for intrinsic subtyping, and showed 6.9% IHC-A-clinical, 72.7% IHC-B-clinical, 5.3% IHC-HER2-clinical and 15.1% triple negative cancer (TNC). Typing using the PAM50 gave 19.3% luminal-A, 32.5% luminal-B, 23.5% HER2-enriched and 24.6% basal-like. The basal-like and TNC had the highest concordance, while the luminal-A and IHC-A group had the lowest concordance. By altering the cutoff for Ki67, and realigning the HER2/ER/PR-positive patients to IHC-HER2, we improved concordance with the intrinsic subtypes. Conclusion We suggest that the Ki67 be changed to a cutoff of 20–25% in our population to better reflect the luminal subtype classifications. This change would inform treatment options for breast cancer patients in settings where genomic assays are unaffordable.
Breast cancer is a heterogeneous disease with different gene expression profiles, treatment options and outcomes. In South Africa, tumors are classified using immunohistochemistry. In high-income countries multiparameter genomic assays are being utilized with implications for tumor classification and treatment. In a cohort of 378 breast cancer patients from the SABCHO study, we investigated the concordance between tumor samples classified by IHC and the PAM50 gene assay. IHC classified patients as ER-positive (77.5%), PR-positive (70.6%), and HER2-positive (32.3%). These results, together with Ki67, were used as surrogates for intrinsic subtyping, and showed 6.9% IHC-A-clinical, 72.7% IHC-B-clinical, 5.3% IHC-HER2-clinical and 15.1% triple negative cancer (TNC). Typing using the PAM50 gave 19.3% luminal-A, 32.5% luminal-B, 23.5% HER2-enriched and 24.6% basal-like. The basal-like and TNC had the highest concordance, while the luminal-A and IHC-A group had the lowest concordance. By altering the cutoff for Ki67, and realigning the HER2/ER/PR-positive patients to IHC-HER2, we improved concordance with the intrinsic subtypes. We suggest that the Ki67 be changed to a cutoff of 20-25% in our population to better reflect the luminal subtype classifications. This change would inform treatment options for breast cancer patients in settings where genomic assays are unaffordable.
PurposeBreast cancer is a heterogeneous disease with different gene expression profiles, treatment options and outcomes. In South Africa, tumors are classified using immunohistochemistry. In high-income countries multiparameter genomic assays are being utilized with implications for tumor classification and treatment.MethodsIn a cohort of 378 breast cancer patients from the SABCHO study, we investigated the concordance between tumor samples classified by IHC and the PAM50 gene assay.ResultsIHC classified patients as ER-positive (77.5%), PR-positive (70.6%), and HER2-positive (32.3%). These results, together with Ki67, were used as surrogates for intrinsic subtyping, and showed 6.9% IHC-A-clinical, 72.7% IHC-B-clinical, 5.3% IHC-HER2-clinical and 15.1% triple negative cancer (TNC). Typing using the PAM50 gave 19.3% luminal-A, 32.5% luminal-B, 23.5% HER2-enriched and 24.6% basal-like. The basal-like and TNC had the highest concordance, while the luminal-A and IHC-A group had the lowest concordance. By altering the cutoff for Ki67, and realigning the HER2/ER/PR-positive patients to IHC-HER2, we improved concordance with the intrinsic subtypes.ConclusionWe suggest that the Ki67 be changed to a cutoff of 20–25% in our population to better reflect the luminal subtype classifications. This change would inform treatment options for breast cancer patients in settings where genomic assays are unaffordable.
Purpose Breast cancer is a heterogeneous disease with different gene expression profiles, treatment options and outcomes. In South Africa, tumors are classified using immunohistochemistry. In high-income countries multiparameter genomic assays are being utilized with implications for tumor classification and treatment. Methods In a cohort of 378 breast cancer patients from the SABCHO study, we investigated the concordance between tumor samples classified by IHC and the PAM50 gene assay. Results IHC classified patients as ER-positive (77.5%), PR-positive (70.6%), and HER2-positive (32.3%). These results, together with Ki67, were used as surrogates for intrinsic subtyping, and showed 6.9% IHC-A-clinical, 72.7% IHC-B-clinical, 5.3% IHC-HER2-clinical and 15.1% triple negative cancer (TNC). Typing using the PAM50 gave 19.3% luminal-A, 32.5% luminal-B, 23.5% HER2-enriched and 24.6% basal-like. The basal-like and TNC had the highest concordance, while the luminal-A and IHC-A group had the lowest concordance. By altering the cutoff for Ki67, and realigning the HER2/ER/PR-positive patients to IHC-HER2, we improved concordance with the intrinsic subtypes. Conclusion We suggest that the Ki67 be changed to a cutoff of 20-25% in our population to better reflect the luminal subtype classifications. This change would inform treatment options for breast cancer patients in settings where genomic assays are unaffordable.
Breast cancer is a heterogeneous disease with different gene expression profiles, treatment options and outcomes. In South Africa, tumors are classified using immunohistochemistry. In high-income countries multiparameter genomic assays are being utilized with implications for tumor classification and treatment.PURPOSEBreast cancer is a heterogeneous disease with different gene expression profiles, treatment options and outcomes. In South Africa, tumors are classified using immunohistochemistry. In high-income countries multiparameter genomic assays are being utilized with implications for tumor classification and treatment.In a cohort of 378 breast cancer patients from the SABCHO study, we investigated the concordance between tumor samples classified by IHC and the PAM50 gene assay.METHODSIn a cohort of 378 breast cancer patients from the SABCHO study, we investigated the concordance between tumor samples classified by IHC and the PAM50 gene assay.IHC classified patients as ER-positive (77.5%), PR-positive (70.6%), and HER2-positive (32.3%). These results, together with Ki67, were used as surrogates for intrinsic subtyping, and showed 6.9% IHC-A-clinical, 72.7% IHC-B-clinical, 5.3% IHC-HER2-clinical and 15.1% triple negative cancer (TNC). Typing using the PAM50 gave 19.3% luminal-A, 32.5% luminal-B, 23.5% HER2-enriched and 24.6% basal-like. The basal-like and TNC had the highest concordance, while the luminal-A and IHC-A group had the lowest concordance. By altering the cutoff for Ki67, and realigning the HER2/ER/PR-positive patients to IHC-HER2, we improved concordance with the intrinsic subtypes.RESULTSIHC classified patients as ER-positive (77.5%), PR-positive (70.6%), and HER2-positive (32.3%). These results, together with Ki67, were used as surrogates for intrinsic subtyping, and showed 6.9% IHC-A-clinical, 72.7% IHC-B-clinical, 5.3% IHC-HER2-clinical and 15.1% triple negative cancer (TNC). Typing using the PAM50 gave 19.3% luminal-A, 32.5% luminal-B, 23.5% HER2-enriched and 24.6% basal-like. The basal-like and TNC had the highest concordance, while the luminal-A and IHC-A group had the lowest concordance. By altering the cutoff for Ki67, and realigning the HER2/ER/PR-positive patients to IHC-HER2, we improved concordance with the intrinsic subtypes.We suggest that the Ki67 be changed to a cutoff of 20-25% in our population to better reflect the luminal subtype classifications. This change would inform treatment options for breast cancer patients in settings where genomic assays are unaffordable.CONCLUSIONWe suggest that the Ki67 be changed to a cutoff of 20-25% in our population to better reflect the luminal subtype classifications. This change would inform treatment options for breast cancer patients in settings where genomic assays are unaffordable.
Breast cancer is a heterogeneous disease with different gene expression profiles, treatment options and outcomes. In South Africa, tumors are classified using immunohistochemistry. In high-income countries multiparameter genomic assays are being utilized with implications for tumor classification and treatment. In a cohort of 378 breast cancer patients from the SABCHO study, we investigated the concordance between tumor samples classified by IHC and the PAM50 gene assay. IHC classified patients as ER-positive (77.5%), PR-positive (70.6%), and HER2-positive (32.3%). These results, together with Ki67, were used as surrogates for intrinsic subtyping, and showed 6.9% IHC-A-clinical, 72.7% IHC-B-clinical, 5.3% IHC-HER2-clinical and 15.1% triple negative cancer (TNC). Typing using the PAM50 gave 19.3% luminal-A, 32.5% luminal-B, 23.5% HER2-enriched and 24.6% basal-like. The basal-like and TNC had the highest concordance, while the luminal-A and IHC-A group had the lowest concordance. By altering the cutoff for Ki67, and realigning the HER2/ER/PR-positive patients to IHC-HER2, we improved concordance with the intrinsic subtypes. We suggest that the Ki67 be changed to a cutoff of 20-25% in our population to better reflect the luminal subtype classifications. This change would inform treatment options for breast cancer patients in settings where genomic assays are unaffordable.
Audience Academic
Author Dix-Peek, Thérèse
van den Berg, Eunice J.
Ruff, Paul
Cubasch, Herbert
Dickens, Caroline
Neugut, Alfred I.
Joffe, Maureen
Jacobson, Judith S.
Duarte, Raquel A. B.
Phakathi, Boitumelo P.
Augustine, Tanya N.
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  surname: Dix-Peek
  fullname: Dix-Peek, Thérèse
  email: therese.dix-peek@wits.ac.za
  organization: Department of Medicine, Faculty of Health Sciences, University of the Witwatersrand
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  givenname: Boitumelo P.
  surname: Phakathi
  fullname: Phakathi, Boitumelo P.
  organization: Department of Surgery, School of Clinical Medicine, Faculty of Health Sciences, University of Kwa-Zulu Natal, Department of Surgery, Faculty of Health Sciences, University of the Witwatersrand
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  givenname: Eunice J.
  surname: van den Berg
  fullname: van den Berg, Eunice J.
  organization: Department of Histopathology, National Health Laboratory Service, Chris Hani Baragwanath Hospital, Department of Anatomical Pathology, University of the Witwatersrand
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  surname: Cubasch
  fullname: Cubasch, Herbert
  organization: Batho Pele Breast Unit, Chris Hani Baragwanath Academic Hospital, SA MRC Common Epithelial Cancer Research Centre, Faculty of Health Sciences, University of the Witwatersrand
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  givenname: Alfred I.
  surname: Neugut
  fullname: Neugut, Alfred I.
  organization: Herbert Irving Comprehensive Cancer Centre, Vagelos College of Physicians and Surgeons, Columbia University, Department of Epidemiology, Mailman School of Public Health, Columbia University
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  givenname: Judith S.
  surname: Jacobson
  fullname: Jacobson, Judith S.
  organization: Herbert Irving Comprehensive Cancer Centre, Vagelos College of Physicians and Surgeons, Columbia University, Department of Epidemiology, Mailman School of Public Health, Columbia University
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  surname: Joffe
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  givenname: Paul
  surname: Ruff
  fullname: Ruff, Paul
  organization: Department of Medicine, Faculty of Health Sciences, University of the Witwatersrand, SA MRC Common Epithelial Cancer Research Centre, Faculty of Health Sciences, University of the Witwatersrand
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  givenname: Raquel A. B.
  orcidid: 0000-0003-2750-2062
  surname: Duarte
  fullname: Duarte, Raquel A. B.
  organization: Department of Medicine, Faculty of Health Sciences, University of the Witwatersrand
BackLink https://www.ncbi.nlm.nih.gov/pubmed/36867282$$D View this record in MEDLINE/PubMed
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Issue 1
Keywords Immunohistochemistry
PAM50
Subtypes
Breast cancer
Sub-Saharan Africa
Language English
License 2023. The Author(s).
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PublicationTitle Breast cancer research and treatment
PublicationTitleAbbrev Breast Cancer Res Treat
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References_xml – reference: NwaguGCBhattaraiSSwahnMAhmedSAnejaRPrevalence and mortality of triple-negative breast cancer in West Africa: biologic and sociocultural factorsJCO Glob Oncol202110.1200/go.21.00082342647598457872
– reference: Ferlay J, Ervik M, Lam F, Colombet M, Mery L, Piñeros M, et al. (2020) Global cancer observatory: cancer today. Lyon, France: International Agency for Research on Cancer. No Title. https://Gco.iarc.fr/Today/
– reference: SungHDeSantisCEFedewaSAKantelhardtEJJemalABreast cancer subtypes among Eastern-African–born black women and other black women in the United StatesCancer2019125340134111:CAS:528:DC%2BC1MXhslyhu7%2FJ10.1002/cncr.3229331190337
– reference: AdenijiAADawoduOOHabeebuMYOyekanAOBashirMAMartinMGDistribution of breast cancer subtypes among Nigerian women and correlation to the risk factors and clinicopathological characteristicsWorld J Oncol2020111651721:CAS:528:DC%2BB3cXisV2qtLfM10.14740/wjon1303328499577430856
– reference: AchilonuOJSinghENimakoGEijkemansRMJCMusengeERule-based information extraction from free-text pathology reports reveals trends in South african female breast cancer molecular subtypes and Ki67 expressionBiomed Res Int202220221171:CAS:528:DC%2BB38XkvFCisbY%3D10.1155/2022/6157861
– reference: LundgrenCBendahlPOBorgÅEhingerAHegardtCLarssonCAgreement between molecular subtyping and surrogate subtype classification: a contemporary population-based study of ER-positive/HER2-negative primary breast cancerBreast Cancer Res Treat20191784594671:CAS:528:DC%2BC1MXhs1art73K10.1007/s10549-019-05378-7314323676797629
– reference: PingJGuoXYeFLongJLipworthLCaiQDifferences in gene-expression profiles in breast cancer between African and European-ancestry womenCarcinogenesis20214188789310.1093/CARCIN/BGAA035
– reference: ElmoreSNCMushongaMIyerHSKandaCChibondaSChipidzaFBreast cancer in Zimbabwe: patterns of care and correlates of adherence in a national referral hospital radiotherapy center cohort from 2014 to 2018Cancer Med2021103489349810.1002/cam4.3764339733998178482
– reference: DickensCDuarteRZietsmanACubaschHKellettPSchuzJRacial comparison of receptor-defined breast cancer in Southern African women: Subtype prevalence and age—incidence analysis of nationwide cancer registry dataCancer Epidemiol Biomarkers Prev2014232311232110.1158/1055-9965.EPI-14-060325143359
– reference: DowsettMNielsenTOA’HernRBartlettJCoombesRCCuzickJAssessment of Ki67 in breast cancer: recommendations from the international Ki67 in breast cancer working GroupJ Natl Cancer Inst2011103165616641:CAS:528:DC%2BC3MXhsFantrbF10.1093/jnci/djr393219607073216967
– reference: FitzgibbonsPLDillonDAAlsabehRBermanMAHayesDFHicksDGTemplate for reporting results of biomarker testing of specimens from patients with carcinoma of the breastArch Pathol Lab Med201413859560110.5858/arpa.2013-0566-CP24236805
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– reference: Fernandez-MartinezAPascualTPerroneGMoralesSde La HabaJGonzález-RiveraMLimitations in predicting PAM50 intrinsic subtype and risk of relapse score with Ki67 in estrogen receptor-positive HER2- negative breast cancerOncotarget20178219302193710.18632/oncotarget.1574828423537
– reference: AnyigbaCAAwandareGAPaemkaLBreast cancer in sub-Saharan Africa: the current state and uncertain futureExp Biol Med2021246137713871:CAS:528:DC%2BB3MXhsVWlu7vK10.1177/15353702211006047
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– reference: VialeGThe current state of breast cancer classificationAnn Oncol201223x207x21010.1093/annonc/mds32622987963
– reference: HarrisLNIsmailaNMcShaneLMAndreFCollyarDEGonzalez-AnguloAMUse of biomarkers to guide decisions on adjuvant systemic therapy for women with early-stage invasive breast cancer: American Society of clinical Oncology clinical practice guidelineJ Clin Oncol201634113411501:CAS:528:DC%2BC2sXnvF2rsQ%3D%3D10.1200/JCO.2015.65.2289268583394933134
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– reference: MiguelFLopesLVFerreiraERibasEPelaezAFLealCBreast cancer in Angola, molecular subtypes: a first glanceEcancermedicalscience20171111010.3332/ecancer.2017.763
– reference: PuMMesserKDaviesSRVickeryTLPittmanEParkerBAResearch-based PAM50 signature and long-term breast cancer survivalBreast Cancer Res Treat20201791972061:CAS:528:DC%2BC1MXhvVakurfL10.1007/s10549-019-05446-y31542876
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Snippet Purpose Breast cancer is a heterogeneous disease with different gene expression profiles, treatment options and outcomes. In South Africa, tumors are...
Breast cancer is a heterogeneous disease with different gene expression profiles, treatment options and outcomes. In South Africa, tumors are classified using...
Purpose Breast cancer is a heterogeneous disease with different gene expression profiles, treatment options and outcomes. In South Africa, tumors are...
PurposeBreast cancer is a heterogeneous disease with different gene expression profiles, treatment options and outcomes. In South Africa, tumors are classified...
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SubjectTerms Biomarkers, Tumor - genetics
Biomarkers, Tumor - metabolism
Breast cancer
Breast Neoplasms - pathology
Cancer research
Care and treatment
Discordance
ErbB-2 protein
Female
Gene expression
Genes
Genomics
Humans
Immunohistochemistry
Ki-67 Antigen - genetics
Medical research
Medicine
Medicine & Public Health
Medicine, Experimental
Oncology
Patients
Preclinical Study
Receptor, ErbB-2 - genetics
Receptor, ErbB-2 - metabolism
Receptors, Progesterone - genetics
Receptors, Progesterone - metabolism
South Africa - epidemiology
Tumors
Women
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Title Discordance between PAM50 intrinsic subtyping and immunohistochemistry in South African women with breast cancer
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