Simultaneous reconstruction of evolutionary history and epidemiological dynamics from viral sequences with the birth-death SIR model

The evolution of RNA viruses, such as human immunodeficiency virus (HIV), hepatitis C virus and influenza virus, occurs so rapidly that the viruses' genomes contain information on past ecological dynamics. Hence, we develop a phylodynamic method that enables the joint estimation of epidemiologi...

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Bibliographic Details
Published in:	Journal of the Royal Society interface Vol. 11; no. 94; p. 20131106
Main Authors:	Kühnert, Denise, Stadler, Tanja, Vaughan, Timothy G, Drummond, Alexei J
Format:	Journal Article
Language:	English
Published:	England 06.05.2014
Subjects:	Argentina - epidemiology Genotype Hepacivirus - genetics Hepatitis C - epidemiology Hepatitis C - genetics HIV Infections - epidemiology HIV Infections - genetics HIV-1 - immunology Humans Models, Biological Phylogeny United Kingdom - epidemiology mathematical epidemiology Bayesian phylogenetics birth–death prior phylodynamics
ISSN:	1742-5662, 1742-5662
Online Access:	Get more information
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