Genomic Characterization of the Genus Nairovirus (Family Bunyaviridae)

Nairovirus, one of five bunyaviral genera, includes seven species. Genomic sequence information is limited for members of the Dera Ghazi Khan, Hughes, Qalyub, Sakhalin, and Thiafora nairovirus species. We used next-generation sequencing and historical virus-culture samples to determine 14 complete a...

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Published in:Viruses Vol. 8; no. 6; p. 164
Main Authors: Kuhn, Jens, Wiley, Michael, Rodriguez, Sergio, Bào, Yīmíng, Prieto, Karla, Travassos da Rosa, Amelia, Guzman, Hilda, Savji, Nazir, Ladner, Jason, Tesh, Robert, Wada, Jiro, Jahrling, Peter, Bente, Dennis, Palacios, Gustavo
Format: Journal Article
Language:English
Published: Switzerland MDPI AG 10.06.2016
MDPI
Subjects:
Abu hammad virus
Animals
Araneae
Bunyaviridae
bunyavirus
Cluster Analysis
Dera Ghazi Khan virus
Erve virus
Ganjam virus
Genetic Variation
Genome, Viral
Genomes
Glycoproteins
High-Throughput Nucleotide Sequencing
Hughes virus
Infectious diseases
Ixodidae
Nairobi sheep disease
Nairovirus
Nairovirus - classification
Nairovirus - genetics
Nairovirus - isolation & purification
New species
Phlebovirus
Phylogenetics
Phylogeny
Proteins
Qalyub virus
RNA polymerase
RNA, Viral - genetics
Sakhalin virus
Sapphire ii virus
Sequence Analysis, DNA
Sequence Homology
Taxonomy
Tunis virus
virus classification
virus taxonomy
Viruses
Tunis virus
nairovirus
Bunyaviridae
Sakhalin virus
Dera Ghazi Khan virus
bunyavirus
Erve virus
Ganjam virus
virus classification
virus taxonomy
Hughes virus
Qalyub virus
ISSN:1999-4915, 1999-4915
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Abstract Nairovirus, one of five bunyaviral genera, includes seven species. Genomic sequence information is limited for members of the Dera Ghazi Khan, Hughes, Qalyub, Sakhalin, and Thiafora nairovirus species. We used next-generation sequencing and historical virus-culture samples to determine 14 complete and nine coding-complete nairoviral genome sequences to further characterize these species. Previously unsequenced viruses include Abu Mina, Clo Mor, Great Saltee, Hughes, Raza, Sakhalin, Soldado, and Tillamook viruses. In addition, we present genomic sequence information on additional isolates of previously sequenced Avalon, Dugbe, Sapphire II, and Zirqa viruses. Finally, we identify Tunis virus, previously thought to be a phlebovirus, as an isolate of Abu Hammad virus. Phylogenetic analyses indicate the need for reassignment of Sapphire II virus to Dera Ghazi Khan nairovirus and reassignment of Hazara, Tofla, and Nairobi sheep disease viruses to novel species. We also propose new species for the Kasokero group (Kasokero, Leopards Hill, Yogue viruses), the Ketarah group (Gossas, Issyk-kul, Keterah/soft tick viruses) and the Burana group (Wēnzhōu tick virus, Huángpí tick virus 1, Tǎchéng tick virus 1). Our analyses emphasize the sister relationship of nairoviruses and arenaviruses, and indicate that several nairo-like viruses (Shāyáng spider virus 1, Xīnzhōu spider virus, Sānxiá water strider virus 1, South Bay virus, Wǔhàn millipede virus 2) require establishment of novel genera in a larger nairovirus-arenavirus supergroup.
AbstractList Nairovirus, one of five bunyaviral genera, includes seven species. Genomic sequence information is limited for members of the Dera Ghazi Khan, Hughes, Qalyub, Sakhalin, and Thiafora nairovirus species. We used next-generation sequencing and historical virus-culture samples to determine 14 complete and nine coding-complete nairoviral genome sequences to further characterize these species. Previously unsequenced viruses include Abu Mina, Clo Mor, Great Saltee, Hughes, Raza, Sakhalin, Soldado, and Tillamook viruses. In addition, we present genomic sequence information on additional isolates of previously sequenced Avalon, Dugbe, Sapphire II, and Zirqa viruses. Finally, we identify Tunis virus, previously thought to be a phlebovirus, as an isolate of Abu Hammad virus. Phylogenetic analyses indicate the need for reassignment of Sapphire II virus to Dera Ghazi Khan nairovirus and reassignment of Hazara, Tofla, and Nairobi sheep disease viruses to novel species. We also propose new species for the Kasokero group (Kasokero, Leopards Hill, Yogue viruses), the Ketarah group (Gossas, Issyk-kul, Keterah/soft tick viruses) and the Burana group (Wēnzhōu tick virus, Huángpí tick virus 1, Tǎchéng tick virus 1). Our analyses emphasize the sister relationship of nairoviruses and arenaviruses, and indicate that several nairo-like viruses (Shāyáng spider virus 1, Xīnzhōu spider virus, Sānxiá water strider virus 1, South Bay virus, Wǔhàn millipede virus 2) require establishment of novel genera in a larger nairovirus-arenavirus supergroup.
Nairovirus, one of five bunyaviral genera, includes seven species. Genomic sequence information is limited for members of the Dera Ghazi Khan, Hughes, Qalyub, Sakhalin, and Thiafora nairovirus species. We used next-generation sequencing and historical virus-culture samples to determine 14 complete and nine coding-complete nairoviral genome sequences to further characterize these species. Previously unsequenced viruses include Abu Mina, Clo Mor, Great Saltee, Hughes, Raza, Sakhalin, Soldado, and Tillamook viruses. In addition, we present genomic sequence information on additional isolates of previously sequenced Avalon, Dugbe, Sapphire II, and Zirqa viruses. Finally, we identify Tunis virus, previously thought to be a phlebovirus, as an isolate of Abu Hammad virus. Phylogenetic analyses indicate the need for reassignment of Sapphire II virus to Dera Ghazi Khan nairovirus and reassignment of Hazara, Tofla, and Nairobi sheep disease viruses to novel species. We also propose new species for the Kasokero group (Kasokero, Leopards Hill, Yogue viruses), the Ketarah group (Gossas, Issyk-kul, Keterah/soft tick viruses) and the Burana group (Wēnzhōu tick virus, Huángpí tick virus 1, Tǎchéng tick virus 1). Our analyses emphasize the sister relationship of nairoviruses and arenaviruses, and indicate that several nairo-like viruses (Shāyáng spider virus 1, Xīnzhōu spider virus, Sānxiá water strider virus 1, South Bay virus, Wǔhàn millipede virus 2) require establishment of novel genera in a larger nairovirus-arenavirus supergroup.Nairovirus, one of five bunyaviral genera, includes seven species. Genomic sequence information is limited for members of the Dera Ghazi Khan, Hughes, Qalyub, Sakhalin, and Thiafora nairovirus species. We used next-generation sequencing and historical virus-culture samples to determine 14 complete and nine coding-complete nairoviral genome sequences to further characterize these species. Previously unsequenced viruses include Abu Mina, Clo Mor, Great Saltee, Hughes, Raza, Sakhalin, Soldado, and Tillamook viruses. In addition, we present genomic sequence information on additional isolates of previously sequenced Avalon, Dugbe, Sapphire II, and Zirqa viruses. Finally, we identify Tunis virus, previously thought to be a phlebovirus, as an isolate of Abu Hammad virus. Phylogenetic analyses indicate the need for reassignment of Sapphire II virus to Dera Ghazi Khan nairovirus and reassignment of Hazara, Tofla, and Nairobi sheep disease viruses to novel species. We also propose new species for the Kasokero group (Kasokero, Leopards Hill, Yogue viruses), the Ketarah group (Gossas, Issyk-kul, Keterah/soft tick viruses) and the Burana group (Wēnzhōu tick virus, Huángpí tick virus 1, Tǎchéng tick virus 1). Our analyses emphasize the sister relationship of nairoviruses and arenaviruses, and indicate that several nairo-like viruses (Shāyáng spider virus 1, Xīnzhōu spider virus, Sānxiá water strider virus 1, South Bay virus, Wǔhàn millipede virus 2) require establishment of novel genera in a larger nairovirus-arenavirus supergroup.
Nairovirus, one of five bunyaviral genera, includes seven species. Genomic sequence information is limited for members of the Dera Ghazi Khan, Hughes, Qalyub, Sakhalin, and Thiafora nairovirus species. We used next-generation sequencing and historical virus-culture samples to determine 14 complete and nine coding-complete nairoviral genome sequences to further characterize these species. Previously unsequenced viruses include Abu Mina, Clo Mor, Great Saltee, Hughes, Raza, Sakhalin, Soldado, and Tillamook viruses. In addition, we present genomic sequence information on additional isolates of previously sequenced Avalon, Dugbe, Sapphire II, and Zirqa viruses. Finally, we identify Tunis virus, previously thought to be a phlebovirus, as an isolate of Abu Hammad virus. Phylogenetic analyses indicate the need for reassignment of Sapphire II virus to Dera Ghazi Khan nairovirus and reassignment of Hazara, Tofla, and Nairobi sheep disease viruses to novel species. We also propose new species for the Kasokero group (Kasokero, Leopards Hill, Yogue viruses), the Ketarah group (Gossas, Issyk-kul, Keterah/soft tick viruses) and the Burana group (Wenzhou tick virus, Huangpi tick virus 1, Tacheng tick virus 1). Our analyses emphasize the sister relationship of nairoviruses and arenaviruses, and indicate that several nairo-like viruses (Shayang spider virus 1, Xinzhou spider virus, Sanxia water strider virus 1, South Bay virus, W[Latinhan millipede virus 2) require establishment of novel genera in a larger nairovirus-arenavirus supergroup.
Author Savji, Nazir
Wada, Jiro
Guzman, Hilda
Kuhn, Jens
Bente, Dennis
Jahrling, Peter
Prieto, Karla
Rodriguez, Sergio
Travassos da Rosa, Amelia
Ladner, Jason
Bào, Yīmíng
Wiley, Michael
Tesh, Robert
Palacios, Gustavo
AuthorAffiliation 1 Integrated Research Facility at Fort Detrick, Division of Clinical Research, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Frederick, MD 21702, USA; kuhnjens@mail.nih.gov (J.H.K.); wadaj@mail.nih.gov (J.W.); jahrlingp@niaid.nih.gov (P.B.J.)
3 Galveston National Laboratory, Institute for Human Infection and Immunity, Department of Microbiology & Immunology, University of Texas Medical Branch, Galveston, TX 77555, USA; seerodri@utmb.edu (S.E.R.); aptravas@utmb.edu (A.P.A.T.d.R.); hguzman@utmb.edu (H.G.); rtesh@utmb.edu (R.B.T.); dabente@utmb.edu (D.A.B.)
2 Center for Genome Sciences, United States Army Medical Research Institute of Infectious Diseases, Fort Detrick, Frederick, MD 21702, USA; michael.r.wiley19.ctr@mail.mil (M.R.W.); karla.prieto.ctr@mail.mil (K.P.); jason.t.ladner.ctr@mail.mil (J.T.L.)
4 Information Engineering Branch, National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda
AuthorAffiliation_xml – name: 3 Galveston National Laboratory, Institute for Human Infection and Immunity, Department of Microbiology & Immunology, University of Texas Medical Branch, Galveston, TX 77555, USA; seerodri@utmb.edu (S.E.R.); aptravas@utmb.edu (A.P.A.T.d.R.); hguzman@utmb.edu (H.G.); rtesh@utmb.edu (R.B.T.); dabente@utmb.edu (D.A.B.)
– name: 2 Center for Genome Sciences, United States Army Medical Research Institute of Infectious Diseases, Fort Detrick, Frederick, MD 21702, USA; michael.r.wiley19.ctr@mail.mil (M.R.W.); karla.prieto.ctr@mail.mil (K.P.); jason.t.ladner.ctr@mail.mil (J.T.L.)
– name: 4 Information Engineering Branch, National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20892, USA; bao@ncbi.nlm.nih.gov (Y.B.)
– name: 5 School of Medicine, New York University, New York, NY 10016, USA; nazir.savji@gmail.com (N.S.)
– name: 1 Integrated Research Facility at Fort Detrick, Division of Clinical Research, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Frederick, MD 21702, USA; kuhnjens@mail.nih.gov (J.H.K.); wadaj@mail.nih.gov (J.W.); jahrlingp@niaid.nih.gov (P.B.J.)
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BackLink https://www.ncbi.nlm.nih.gov/pubmed/27294949$$D View this record in MEDLINE/PubMed
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Copyright Copyright MDPI AG 2016
2016 by the authors; licensee MDPI, Basel, Switzerland. 2016
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Issue 6
Keywords Tunis virus
nairovirus
Bunyaviridae
Sakhalin virus
Dera Ghazi Khan virus
bunyavirus
Erve virus
Ganjam virus
virus classification
virus taxonomy
Hughes virus
Qalyub virus
Language English
License This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC-BY) license (http://creativecommons.org/licenses/by/4.0/).
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PublicationTitle Viruses
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Snippet Nairovirus, one of five bunyaviral genera, includes seven species. Genomic sequence information is limited for members of the Dera Ghazi Khan, Hughes, Qalyub,...
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StartPage 164
SubjectTerms Abu hammad virus
Animals
Araneae
Bunyaviridae
bunyavirus
Cluster Analysis
Dera Ghazi Khan virus
Erve virus
Ganjam virus
Genetic Variation
Genome, Viral
Genomes
Glycoproteins
High-Throughput Nucleotide Sequencing
Hughes virus
Infectious diseases
Ixodidae
Nairobi sheep disease
Nairovirus
Nairovirus - classification
Nairovirus - genetics
Nairovirus - isolation & purification
New species
Phlebovirus
Phylogenetics
Phylogeny
Proteins
Qalyub virus
RNA polymerase
RNA, Viral - genetics
Sakhalin virus
Sapphire ii virus
Sequence Analysis, DNA
Sequence Homology
Taxonomy
Tunis virus
virus classification
virus taxonomy
Viruses
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Title Genomic Characterization of the Genus Nairovirus (Family Bunyaviridae)
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