The mosaic oat genome gives insights into a uniquely healthy cereal crop

Cultivated oat ( Avena sativa L.) is an allohexaploid (AACCDD, 2 n  = 6 x  = 42) thought to have been domesticated more than 3,000 years ago while growing as a weed in wheat, emmer and barley fields in Anatolia 1 , 2 . Oat has a low carbon footprint, substantial health benefits and the potential to...

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Vydáno v:Nature (London) Ročník 606; číslo 7912; s. 113 - 119
Hlavní autoři: Kamal, Nadia, Tsardakas Renhuldt, Nikos, Bentzer, Johan, Gundlach, Heidrun, Haberer, Georg, Juhász, Angéla, Lux, Thomas, Bose, Utpal, Tye-Din, Jason A., Lang, Daniel, van Gessel, Nico, Reski, Ralf, Fu, Yong-Bi, Spégel, Peter, Ceplitis, Alf, Himmelbach, Axel, Waters, Amanda J., Bekele, Wubishet A., Colgrave, Michelle L., Hansson, Mats, Stein, Nils, Mayer, Klaus F. X., Jellen, Eric N., Maughan, Peter J., Tinker, Nicholas A., Mascher, Martin, Olsson, Olof, Spannagl, Manuel, Sirijovski, Nick
Médium: Journal Article
Jazyk:angličtina
Vydáno: London Nature Publishing Group UK 02.06.2022
Nature Publishing Group
Témata:
38/22
38/23
38/39
38/90
38/91
45/22
45/23
45/90
631/181/2474
631/208/2491/3933
631/208/8
631/449/711
631/61/212
82/58
Agricultural and Veterinary sciences
Agricultural Biotechnology
Animal-based foods
Avena sativa
Barley
Bioteknologi med applikationer på växter och djur
Breeding
Carbon footprint
Cereal crops
Cereals
Chromosomes
Cultivation
Diploids
Evolutionary genetics
Gene expression
Gene families
Gene mapping
Genetics and Breeding in Agricultural Sciences
Genetik och förädling inom lantbruksvetenskap
Genomes
Genomics
Gluten
Grain
Grain cultivation
Human nutrition
Humanities and Social Sciences
Lantbruksvetenskap och veterinärmedicin
Mosaics
multidisciplinary
Nutrition
Polyploidy
Proteins
Ribosomal DNA
Science
Science (multidisciplinary)
Special diets
Water use
ISSN:0028-0836, 1476-4687, 1476-4687
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Abstract Cultivated oat ( Avena sativa L.) is an allohexaploid (AACCDD, 2 n  = 6 x  = 42) thought to have been domesticated more than 3,000 years ago while growing as a weed in wheat, emmer and barley fields in Anatolia 1 , 2 . Oat has a low carbon footprint, substantial health benefits and the potential to replace animal-based food products. However, the lack of a fully annotated reference genome has hampered efforts to deconvolute its complex evolutionary history and functional gene dynamics. Here we present a high-quality reference genome of A . sativa and close relatives of its diploid ( Avena longiglumis , AA, 2 n  = 14) and tetraploid ( Avena insularis , CCDD, 2 n  = 4 x  = 28) progenitors. We reveal the mosaic structure of the oat genome, trace large-scale genomic reorganizations in the polyploidization history of oat and illustrate a breeding barrier associated with the genome architecture of oat. We showcase detailed analyses of gene families implicated in human health and nutrition, which adds to the evidence supporting oat safety in gluten-free diets, and we perform mapping-by-sequencing of an agronomic trait related to water-use efficiency. This resource for the Avena genus will help to leverage knowledge from other cereal genomes, improve understanding of basic oat biology and accelerate genomics-assisted breeding and reanalysis of quantitative trait studies. Assembly of the hexaploid oat genome and its diploid and tetraploid relatives clarifies the evolutionary history of oat and allows mapping of genes for agronomic traits.
AbstractList Cultivated oat ( Avena sativa L.) is an allohexaploid (AACCDD, 2 n  = 6 x  = 42) thought to have been domesticated more than 3,000 years ago while growing as a weed in wheat, emmer and barley fields in Anatolia 1,2 . Oat has a low carbon footprint, substantial health benefits and the potential to replace animal-based food products. However, the lack of a fully annotated reference genome has hampered efforts to deconvolute its complex evolutionary history and functional gene dynamics. Here we present a high-quality reference genome of A . sativa and close relatives of its diploid ( Avena longiglumis , AA, 2 n  = 14) and tetraploid ( Avena insularis , CCDD, 2 n  = 4 x  = 28) progenitors. We reveal the mosaic structure of the oat genome, trace large-scale genomic reorganizations in the polyploidization history of oat and illustrate a breeding barrier associated with the genome architecture of oat. We showcase detailed analyses of gene families implicated in human health and nutrition, which adds to the evidence supporting oat safety in gluten-free diets, and we perform mapping-by-sequencing of an agronomic trait related to water-use efficiency. This resource for the Avena genus will help to leverage knowledge from other cereal genomes, improve understanding of basic oat biology and accelerate genomics-assisted breeding and reanalysis of quantitative trait studies.
Cultivated oat ( Avena sativa L.) is an allohexaploid (AACCDD, 2 n  = 6 x  = 42) thought to have been domesticated more than 3,000 years ago while growing as a weed in wheat, emmer and barley fields in Anatolia 1 , 2 . Oat has a low carbon footprint, substantial health benefits and the potential to replace animal-based food products. However, the lack of a fully annotated reference genome has hampered efforts to deconvolute its complex evolutionary history and functional gene dynamics. Here we present a high-quality reference genome of A . sativa and close relatives of its diploid ( Avena longiglumis , AA, 2 n  = 14) and tetraploid ( Avena insularis , CCDD, 2 n  = 4 x  = 28) progenitors. We reveal the mosaic structure of the oat genome, trace large-scale genomic reorganizations in the polyploidization history of oat and illustrate a breeding barrier associated with the genome architecture of oat. We showcase detailed analyses of gene families implicated in human health and nutrition, which adds to the evidence supporting oat safety in gluten-free diets, and we perform mapping-by-sequencing of an agronomic trait related to water-use efficiency. This resource for the Avena genus will help to leverage knowledge from other cereal genomes, improve understanding of basic oat biology and accelerate genomics-assisted breeding and reanalysis of quantitative trait studies. Assembly of the hexaploid oat genome and its diploid and tetraploid relatives clarifies the evolutionary history of oat and allows mapping of genes for agronomic traits.
Cultivated oat (Avena sativa L.) is an allohexaploid (AACCDD, 2n = 6x=42) thought to have been domesticated more than 3,000 years ago while growing as a weed in wheat, emmer and barley fields in Anatolia1,2. Oat has a low carbon footprint, substantial health benefits and the potential to replace animal-based food products. However, the lack of a fully annotated reference genome has hampered efforts to deconvolute its complex evolutionary history and functional gene dynamics. Here we present a high-quality reference genome of A. sativa and close relatives of its diploid (Avena longiglumis, AA, 2n = 14) and tetraploid (Avena insularis, CCDD, 2n =4x = 28) progenitors. We reveal the mosaic structure ofthe oat genome, trace large-scale genomic reorganizations in the polyploidization history of oat and illustrate a breeding barrier associated with the genome architecture ofoat. We showcase detailed analyses of gene families implicated in human health and nutrition, which adds to the evidence supporting oat safety in gluten-free diets, and we perform mapping-by-sequencing of an agronomic trait related to water-use efficiency. This resource for the Avena genus will help to leverage knowledge from other cereal genomes, improve understanding of basic oat biology and accelerate genomics-assisted breeding and reanalysis of quantitative trait studies.
Cultivated oat (Avena sativa L.) is an allohexaploid (AACCDD, 2n = 6x = 42) thought to have been domesticated more than 3,000 years ago while growing as a weed in wheat, emmer and barley fields in Anatolia1,2. Oat has a low carbon footprint, substantial health benefits and the potential to replace animal-based food products. However, the lack of a fully annotated reference genome has hampered efforts to deconvolute its complex evolutionary history and functional gene dynamics. Here we present a high-quality reference genome of A. sativa and close relatives of its diploid (Avena longiglumis, AA, 2n = 14) and tetraploid (Avena insularis, CCDD, 2n = 4x = 28) progenitors. We reveal the mosaic structure of the oat genome, trace large-scale genomic reorganizations in the polyploidization history of oat and illustrate a breeding barrier associated with the genome architecture of oat. We showcase detailed analyses of gene families implicated in human health and nutrition, which adds to the evidence supporting oat safety in gluten-free diets, and we perform mapping-by-sequencing of an agronomic trait related to water-use efficiency. This resource for the Avena genus will help to leverage knowledge from other cereal genomes, improve understanding of basic oat biology and accelerate genomics-assisted breeding and reanalysis of quantitative trait studies.Cultivated oat (Avena sativa L.) is an allohexaploid (AACCDD, 2n = 6x = 42) thought to have been domesticated more than 3,000 years ago while growing as a weed in wheat, emmer and barley fields in Anatolia1,2. Oat has a low carbon footprint, substantial health benefits and the potential to replace animal-based food products. However, the lack of a fully annotated reference genome has hampered efforts to deconvolute its complex evolutionary history and functional gene dynamics. Here we present a high-quality reference genome of A. sativa and close relatives of its diploid (Avena longiglumis, AA, 2n = 14) and tetraploid (Avena insularis, CCDD, 2n = 4x = 28) progenitors. We reveal the mosaic structure of the oat genome, trace large-scale genomic reorganizations in the polyploidization history of oat and illustrate a breeding barrier associated with the genome architecture of oat. We showcase detailed analyses of gene families implicated in human health and nutrition, which adds to the evidence supporting oat safety in gluten-free diets, and we perform mapping-by-sequencing of an agronomic trait related to water-use efficiency. This resource for the Avena genus will help to leverage knowledge from other cereal genomes, improve understanding of basic oat biology and accelerate genomics-assisted breeding and reanalysis of quantitative trait studies.
Cultivated oat (Avena sativa L.) is an allohexaploid (AACCDD, 2n = 6x = 42) thought to have been domesticated more than 3,000 years ago while growing as a weed in wheat, emmer and barley fields in Anatolia1,2. Oat has a low carbon footprint, substantial health benefits and the potential to replace animal-based food products. However, the lack of a fully annotated reference genome has hampered efforts to deconvolute its complex evolutionary history and functional gene dynamics. Here we present a high-quality reference genome of A. sativa and close relatives of its diploid (Avena longiglumis, AA, 2n = 14) and tetraploid (Avena insularis, CCDD, 2n = 4x = 28) progenitors. We reveal the mosaic structure of the oat genome, trace large-scale genomic reorganizations in the polyploidization history of oat and illustrate a breeding barrier associated with the genome architecture of oat. We showcase detailed analyses of gene families implicated in human health and nutrition, which adds to the evidence supporting oat safety in gluten-free diets, and we perform mapping-by-sequencing of an agronomic trait related to water-use efficiency. This resource for the Avena genus will help to leverage knowledge from other cereal genomes, improve understanding of basic oat biology and accelerate genomics-assisted breeding and reanalysis of quantitative trait studies. Assembly of the hexaploid oat genome and its diploid and tetraploid relatives clarifies the evolutionary history of oat and allows mapping of genes for agronomic traits.
Cultivated oat (Avena sativa L.) is an allohexaploid (AACCDD, 2n = 6x = 42) thought to have been domesticated more than 3,000 years ago while growing as a weed in wheat, emmer and barley fields in Anatolia . Oat has a low carbon footprint, substantial health benefits and the potential to replace animal-based food products. However, the lack of a fully annotated reference genome has hampered efforts to deconvolute its complex evolutionary history and functional gene dynamics. Here we present a high-quality reference genome of A. sativa and close relatives of its diploid (Avena longiglumis, AA, 2n = 14) and tetraploid (Avena insularis, CCDD, 2n = 4x = 28) progenitors. We reveal the mosaic structure of the oat genome, trace large-scale genomic reorganizations in the polyploidization history of oat and illustrate a breeding barrier associated with the genome architecture of oat. We showcase detailed analyses of gene families implicated in human health and nutrition, which adds to the evidence supporting oat safety in gluten-free diets, and we perform mapping-by-sequencing of an agronomic trait related to water-use efficiency. This resource for the Avena genus will help to leverage knowledge from other cereal genomes, improve understanding of basic oat biology and accelerate genomics-assisted breeding and reanalysis of quantitative trait studies.
Cultivated oat (Avena sativa L.) is an allohexaploid (AACCDD, 2n = 6x = 42) thought to have been domesticated more than 3,000 years ago while growing as a weed in wheat, emmer and barley fields in Anatolia1,2. Oat has a low carbon footprint, substantial health benefits and the potential to replace animal-based food products. However, the lack of a fully annotated reference genome has hampered efforts to deconvolute its complex evolutionary history and functional gene dynamics. Here we present a high-quality reference genome of A. sativa and close relatives of its diploid (Avena longiglumis, AA, 2n = 14) and tetraploid (Avena insularis, CCDD, 2n = 4x = 28) progenitors. We reveal the mosaic structure of the oat genome, trace large-scale genomic reorganizations in the polyploidization history of oat and illustrate a breeding barrier associated with the genome architecture of oat. We showcase detailed analyses of gene families implicated in human health and nutrition, which adds to the evidence supporting oat safety in gluten-free diets, and we perform mapping-by-sequencing of an agronomic trait related to water-use efficiency. This resource for the Avena genus will help to leverage knowledge from other cereal genomes, improve understanding of basic oat biology and accelerate genomics-assisted breeding and reanalysis of quantitative trait studies.
Author Tinker, Nicholas A.
Colgrave, Michelle L.
Juhász, Angéla
Gundlach, Heidrun
Bekele, Wubishet A.
Lang, Daniel
Stein, Nils
Haberer, Georg
Lux, Thomas
Himmelbach, Axel
Waters, Amanda J.
Tsardakas Renhuldt, Nikos
Olsson, Olof
Reski, Ralf
Tye-Din, Jason A.
Bose, Utpal
Maughan, Peter J.
Spégel, Peter
Sirijovski, Nick
van Gessel, Nico
Jellen, Eric N.
Spannagl, Manuel
Hansson, Mats
Mayer, Klaus F. X.
Bentzer, Johan
Fu, Yong-Bi
Kamal, Nadia
Ceplitis, Alf
Mascher, Martin
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  orcidid: 0000-0001-6484-1077
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  organization: Plant Genome and Systems Biology, German Research Center for Environmental Health, Helmholtz Zentrum München, School of Life Sciences Weihenstephan, Technical University of Munich
– sequence: 23
  givenname: Eric N.
  orcidid: 0000-0002-7906-4845
  surname: Jellen
  fullname: Jellen, Eric N.
  organization: Department of Plant and Wildlife Sciences, Brigham Young University
– sequence: 24
  givenname: Peter J.
  orcidid: 0000-0003-3714-3411
  surname: Maughan
  fullname: Maughan, Peter J.
  organization: Department of Plant and Wildlife Sciences, Brigham Young University
– sequence: 25
  givenname: Nicholas A.
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  surname: Tinker
  fullname: Tinker, Nicholas A.
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  organization: ScanOats Industrial Research Centre, Department of Chemistry, Division of Pure and Applied Biochemistry, Lund University, CropTailor AB, Department of Chemistry, Division of Pure and Applied Biochemistry, Lund University, Food Science Organisation, Oatly AB
BackLink https://www.ncbi.nlm.nih.gov/pubmed/35585233$$D View this record in MEDLINE/PubMed
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2022. The Author(s).
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Profile areas and other strong research environments
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Kemiska institutionen
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Växtbiologi
EXODIAB: Excellence of Diabetes Research in Sweden
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Profilområden och andra starka forskningsmiljöer
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Snippet Cultivated oat ( Avena sativa L.) is an allohexaploid (AACCDD, 2 n  = 6 x  = 42) thought to have been domesticated more than 3,000 years ago while growing as a...
Cultivated oat (Avena sativa L.) is an allohexaploid (AACCDD, 2n = 6x = 42) thought to have been domesticated more than 3,000 years ago while growing as a weed...
Cultivated oat (Avena sativa L.) is an allohexaploid (AACCDD, 2n = 6x=42) thought to have been domesticated more than 3,000 years ago while growing as a weed...
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SubjectTerms 38/22
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Agricultural and Veterinary sciences
Agricultural Biotechnology
Animal-based foods
Avena sativa
Barley
Bioteknologi med applikationer på växter och djur
Breeding
Carbon footprint
Cereal crops
Cereals
Chromosomes
Cultivation
Diploids
Evolutionary genetics
Gene expression
Gene families
Gene mapping
Genetics and Breeding in Agricultural Sciences
Genetik och förädling inom lantbruksvetenskap
Genomes
Genomics
Gluten
Grain
Grain cultivation
Human nutrition
Humanities and Social Sciences
Lantbruksvetenskap och veterinärmedicin
Mosaics
multidisciplinary
Nutrition
Polyploidy
Proteins
Ribosomal DNA
Science
Science (multidisciplinary)
Special diets
Water use
Title The mosaic oat genome gives insights into a uniquely healthy cereal crop
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Volume 606
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