The L1 retrotransposition assay: A retrospective and toolkit

LINE1s (L1s) are a class of mammalian non-LTR (long terminal repeat) retroelements that make up nearly 20% of the human genome. Because of the difficulty of studying the mobilization of endogenous L1s, an exogenous cell culture retrotransposition assay has become integral to research in L1 biology....

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Vydané v:Methods (San Diego, Calif.) Ročník 49; číslo 3; s. 219 - 226
Hlavní autori: Rangwala, Sanjida H., Kazazian, Haig H.
Médium: Journal Article
Jazyk:English
Vydavateľské údaje: United States Elsevier Inc 01.11.2009
Predmet:
Animals
Cell culture assays
Cell Culture Techniques
Cell Line
Chickens
Cricetinae
Genetic Techniques
Humans
LINE1 (L1)
Long Interspersed Nucleotide Elements - physiology
Mice
Models, Genetic
Mutagenesis, Insertional
Non-LTR retrotransposons
Rats
Retrotransposition
Transgenic mice
LINE1 (L1)
Cell culture assays
Retrotransposition
Non-LTR retrotransposons
Transgenic mice
ISSN:1046-2023, 1095-9130, 1095-9130
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Abstract LINE1s (L1s) are a class of mammalian non-LTR (long terminal repeat) retroelements that make up nearly 20% of the human genome. Because of the difficulty of studying the mobilization of endogenous L1s, an exogenous cell culture retrotransposition assay has become integral to research in L1 biology. This assay has allowed for investigation of the mechanism and consequences of mobilization of this retroelement, both in cell lines and in whole animal models. In this paper, we outline the genesis of in vitro retrotransposition systems which led to the development of the L1 retrotransposition assay in the mid-1990s. We then provide a retrospective, describing the many uses and variations of this assay, ending with caveats and predictions for future developments. Finally, we provide detailed protocols on the application of the retrotransposition assay, including lists of constructs available in the L1 research community and cell lines in which this assay has been applied.
AbstractList LINE1s (L1s) are a class of mammalian non-LTR (long terminal repeat) retroelements that make up nearly 20% of the human genome. Because of the difficulty of studying the mobilization of endogenous L1s, an exogenous cell culture retrotransposition assay has become integral to research in L1 biology. This assay has allowed for investigation of the mechanism and consequences of mobilization of this retroelement, both in cell lines and in whole animal models. In this paper, we outline the genesis of in vitro retrotransposition systems which led to the development of the L1 retrotransposition assay in the mid-1990s. We then provide a retrospective, describing the many uses and variations of this assay, ending with caveats and predictions for future developments. Finally, we provide detailed protocols on the application of the retrotransposition assay, including lists of constructs available in the L1 research community and cell lines in which this assay has been applied.
LINE1s (L1s) are a class of mammalian non-LTR (long terminal repeat) retroelements that make up nearly 20% of the human genome. Because of the difficulty of studying the mobilization of endogenous L1s, an exogenous cell culture retrotransposition assay has become integral to research in L1 biology. This assay has allowed for investigation of the mechanism and consequences of mobilization of this retroelement, both in cell lines and in whole animal models. In this paper, we outline the genesis of in vitro retrotransposition systems which led to the development of the L1 retrotransposition assay in the mid-1990s. We then provide a retrospective, describing the many uses and variations of this assay, ending with caveats and predictions for future developments. Finally, we provide detailed protocols on the application of the retrotransposition assay, including lists of constructs available in the L1 research community and cell lines in which this assay has been applied.
LINE1s (L1s) are a class of mammalian non-LTR (long terminal repeat) retroelements that make up nearly 20% of the human genome. Because of the difficulty of studying the mobilization of endogenous L1s, an exogenous cell culture retrotransposition assay has become integral to research in L1 biology. This assay has allowed for investigation of the mechanism and consequences of mobilization of this retroelement, both in cell lines and in whole animal models. In this paper, we outline the genesis of in vitro retrotransposition systems which led to the development of the L1 retrotransposition assay in the mid-1990s. We then provide a retrospective, describing the many uses and variations of this assay, ending with caveats and predictions for future developments. Finally, we provide detailed protocols on the application of the retrotransposition assay, including lists of constructs available in the L1 research community and cell lines in which this assay has been applied.LINE1s (L1s) are a class of mammalian non-LTR (long terminal repeat) retroelements that make up nearly 20% of the human genome. Because of the difficulty of studying the mobilization of endogenous L1s, an exogenous cell culture retrotransposition assay has become integral to research in L1 biology. This assay has allowed for investigation of the mechanism and consequences of mobilization of this retroelement, both in cell lines and in whole animal models. In this paper, we outline the genesis of in vitro retrotransposition systems which led to the development of the L1 retrotransposition assay in the mid-1990s. We then provide a retrospective, describing the many uses and variations of this assay, ending with caveats and predictions for future developments. Finally, we provide detailed protocols on the application of the retrotransposition assay, including lists of constructs available in the L1 research community and cell lines in which this assay has been applied.
Author Rangwala, Sanjida H.
Kazazian, Haig H.
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Keywords LINE1 (L1)
Cell culture assays
Retrotransposition
Non-LTR retrotransposons
Transgenic mice
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Snippet LINE1s (L1s) are a class of mammalian non-LTR (long terminal repeat) retroelements that make up nearly 20% of the human genome. Because of the difficulty of...
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elsevier
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StartPage 219
SubjectTerms Animals
Cell culture assays
Cell Culture Techniques
Cell Line
Chickens
Cricetinae
Genetic Techniques
Humans
LINE1 (L1)
Long Interspersed Nucleotide Elements - physiology
Mice
Models, Genetic
Mutagenesis, Insertional
Non-LTR retrotransposons
Rats
Retrotransposition
Transgenic mice
Title The L1 retrotransposition assay: A retrospective and toolkit
URI https://dx.doi.org/10.1016/j.ymeth.2009.04.012
https://www.ncbi.nlm.nih.gov/pubmed/19398011
https://www.proquest.com/docview/734090830
https://www.proquest.com/docview/968170794
https://pubmed.ncbi.nlm.nih.gov/PMC2763987
Volume 49
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