An atlas of the protein-coding genes in the human, pig, and mouse brain

The brain, with its diverse physiology and intricate cellular organization, is the most complex organ of the mammalian body. To expand our basic understanding of the neurobiology of the brain and its diseases, we performed a comprehensive molecular dissection of 10 major brain regions and multiple s...

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Vydáno v:	Science (American Association for the Advancement of Science) Ročník 367; číslo 6482
Hlavní autoři:	Sjöstedt, Evelina, Zhong, Wen, Fagerberg, Linn, Karlsson, Max, Mitsios, Nicholas, Adori, Csaba, Oksvold, Per, Edfors, Fredrik, Limiszewska, Agnieszka, Hikmet, Feria, Huang, Jinrong, Du, Yutao, Lin, Lin, Dong, Zhanying, Yang, Ling, Liu, Xin, Jiang, Hui, Xu, Xun, Wang, Jian, Yang, Huanming, Bolund, Lars, Mardinoglu, Adil, Zhang, Cheng, von Feilitzen, Kalle, Lindskog, Cecilia, Pontén, Fredrik, Luo, Yonglun, Hökfelt, Tomas, Uhlén, Mathias, Mulder, Jan
Médium:	Journal Article
Jazyk:	angličtina
Vydáno:	United States 06.03.2020
Témata:	Animals Atlases as Topic Brain - physiology Datasets as Topic Female Gene Expression Regulation Humans Male Mice Mice, Inbred C57BL Nerve Tissue Proteins - genetics Organ Specificity - genetics Species Specificity Swine Transcriptome
ISSN:	1095-9203, 1095-9203
On-line přístup:	Zjistit podrobnosti o přístupu
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Abstract	The brain, with its diverse physiology and intricate cellular organization, is the most complex organ of the mammalian body. To expand our basic understanding of the neurobiology of the brain and its diseases, we performed a comprehensive molecular dissection of 10 major brain regions and multiple subregions using a variety of transcriptomics methods and antibody-based mapping. This analysis was carried out in the human, pig, and mouse brain to allow the identification of regional expression profiles, as well as to study similarities and differences in expression levels between the three species. The resulting data have been made available in an open-access Brain Atlas resource, part of the Human Protein Atlas, to allow exploration and comparison of the expression of individual protein-coding genes in various parts of the mammalian brain.
AbstractList	The brain, with its diverse physiology and intricate cellular organization, is the most complex organ of the mammalian body. To expand our basic understanding of the neurobiology of the brain and its diseases, we performed a comprehensive molecular dissection of 10 major brain regions and multiple subregions using a variety of transcriptomics methods and antibody-based mapping. This analysis was carried out in the human, pig, and mouse brain to allow the identification of regional expression profiles, as well as to study similarities and differences in expression levels between the three species. The resulting data have been made available in an open-access Brain Atlas resource, part of the Human Protein Atlas, to allow exploration and comparison of the expression of individual protein-coding genes in various parts of the mammalian brain.The brain, with its diverse physiology and intricate cellular organization, is the most complex organ of the mammalian body. To expand our basic understanding of the neurobiology of the brain and its diseases, we performed a comprehensive molecular dissection of 10 major brain regions and multiple subregions using a variety of transcriptomics methods and antibody-based mapping. This analysis was carried out in the human, pig, and mouse brain to allow the identification of regional expression profiles, as well as to study similarities and differences in expression levels between the three species. The resulting data have been made available in an open-access Brain Atlas resource, part of the Human Protein Atlas, to allow exploration and comparison of the expression of individual protein-coding genes in various parts of the mammalian brain. The brain, with its diverse physiology and intricate cellular organization, is the most complex organ of the mammalian body. To expand our basic understanding of the neurobiology of the brain and its diseases, we performed a comprehensive molecular dissection of 10 major brain regions and multiple subregions using a variety of transcriptomics methods and antibody-based mapping. This analysis was carried out in the human, pig, and mouse brain to allow the identification of regional expression profiles, as well as to study similarities and differences in expression levels between the three species. The resulting data have been made available in an open-access Brain Atlas resource, part of the Human Protein Atlas, to allow exploration and comparison of the expression of individual protein-coding genes in various parts of the mammalian brain.
Author	Du, Yutao von Feilitzen, Kalle Sjöstedt, Evelina Zhang, Cheng Uhlén, Mathias Xu, Xun Adori, Csaba Pontén, Fredrik Fagerberg, Linn Huang, Jinrong Bolund, Lars Lin, Lin Zhong, Wen Yang, Huanming Mardinoglu, Adil Wang, Jian Dong, Zhanying Lindskog, Cecilia Hökfelt, Tomas Jiang, Hui Luo, Yonglun Karlsson, Max Oksvold, Per Hikmet, Feria Edfors, Fredrik Limiszewska, Agnieszka Mitsios, Nicholas Liu, Xin Yang, Ling Mulder, Jan
Author_xml	– sequence: 1 givenname: Evelina orcidid: 0000-0002-0327-7377 surname: Sjöstedt fullname: Sjöstedt, Evelina organization: Department of Protein Science, Science for Life Laboratory, KTH-Royal Institute of Technology, 17121 Stockholm, Sweden – sequence: 2 givenname: Wen orcidid: 0000-0002-7422-6104 surname: Zhong fullname: Zhong, Wen organization: Department of Protein Science, Science for Life Laboratory, KTH-Royal Institute of Technology, 17121 Stockholm, Sweden – sequence: 3 givenname: Linn orcidid: 0000-0003-0198-7137 surname: Fagerberg fullname: Fagerberg, Linn organization: Department of Protein Science, Science for Life Laboratory, KTH-Royal Institute of Technology, 17121 Stockholm, Sweden – sequence: 4 givenname: Max orcidid: 0000-0002-7000-4416 surname: Karlsson fullname: Karlsson, Max organization: Department of Protein Science, Science for Life Laboratory, KTH-Royal Institute of Technology, 17121 Stockholm, Sweden – sequence: 5 givenname: Nicholas orcidid: 0000-0001-6243-4953 surname: Mitsios fullname: Mitsios, Nicholas organization: Department of Neuroscience, Karolinska Institutet, 171 77 Stockholm, Sweden – sequence: 6 givenname: Csaba surname: Adori fullname: Adori, Csaba organization: Department of Neuroscience, Karolinska Institutet, 171 77 Stockholm, Sweden – sequence: 7 givenname: Per orcidid: 0000-0003-3014-5502 surname: Oksvold fullname: Oksvold, Per organization: Department of Protein Science, Science for Life Laboratory, KTH-Royal Institute of Technology, 17121 Stockholm, Sweden – sequence: 8 givenname: Fredrik orcidid: 0000-0002-0017-7987 surname: Edfors fullname: Edfors, Fredrik organization: Department of Protein Science, Science for Life Laboratory, KTH-Royal Institute of Technology, 17121 Stockholm, Sweden – sequence: 9 givenname: Agnieszka orcidid: 0000-0003-1601-8195 surname: Limiszewska fullname: Limiszewska, Agnieszka organization: Department of Neuroscience, Karolinska Institutet, 171 77 Stockholm, Sweden – sequence: 10 givenname: Feria orcidid: 0000-0002-3750-9308 surname: Hikmet fullname: Hikmet, Feria organization: Department of Immunology, Genetics and Pathology, Uppsala University, 751 85 Uppsala, Sweden – sequence: 11 givenname: Jinrong orcidid: 0000-0001-8085-9939 surname: Huang fullname: Huang, Jinrong organization: Department of Biology, University of Copenhagen, 2100 Copenhagen, Denmark – sequence: 12 givenname: Yutao surname: Du fullname: Du, Yutao organization: China National GeneBank, BGI-Shenzhen, Shenzhen 518083, China – sequence: 13 givenname: Lin orcidid: 0000-0002-7546-4948 surname: Lin fullname: Lin, Lin organization: Department of Biomedicine, Aarhus University, 80000 Aarhus, Denmark – sequence: 14 givenname: Zhanying surname: Dong fullname: Dong, Zhanying organization: Department of Biomedicine, Aarhus University, 80000 Aarhus, Denmark – sequence: 15 givenname: Ling orcidid: 0000-0002-5425-8256 surname: Yang fullname: Yang, Ling organization: Department of Biomedicine, Aarhus University, 80000 Aarhus, Denmark – sequence: 16 givenname: Xin orcidid: 0000-0003-3256-2940 surname: Liu fullname: Liu, Xin organization: China National GeneBank, BGI-Shenzhen, Shenzhen 518083, China – sequence: 17 givenname: Hui surname: Jiang fullname: Jiang, Hui organization: MGI, BGI-Shenzhen, Shenzhen 518083, China – sequence: 18 givenname: Xun orcidid: 0000-0002-5338-5173 surname: Xu fullname: Xu, Xun organization: China National GeneBank, BGI-Shenzhen, Shenzhen 518083, China – sequence: 19 givenname: Jian surname: Wang fullname: Wang, Jian organization: China National GeneBank, BGI-Shenzhen, Shenzhen 518083, China – sequence: 20 givenname: Huanming orcidid: 0000-0003-1703-3012 surname: Yang fullname: Yang, Huanming organization: China National GeneBank, BGI-Shenzhen, Shenzhen 518083, China – sequence: 21 givenname: Lars surname: Bolund fullname: Bolund, Lars organization: Department of Biomedicine, Aarhus University, 80000 Aarhus, Denmark – sequence: 22 givenname: Adil orcidid: 0000-0002-4254-6090 surname: Mardinoglu fullname: Mardinoglu, Adil organization: Department of Protein Science, Science for Life Laboratory, KTH-Royal Institute of Technology, 17121 Stockholm, Sweden – sequence: 23 givenname: Cheng orcidid: 0000-0002-3721-8586 surname: Zhang fullname: Zhang, Cheng organization: Department of Protein Science, Science for Life Laboratory, KTH-Royal Institute of Technology, 17121 Stockholm, Sweden – sequence: 24 givenname: Kalle orcidid: 0000-0002-0257-7554 surname: von Feilitzen fullname: von Feilitzen, Kalle organization: Department of Protein Science, Science for Life Laboratory, KTH-Royal Institute of Technology, 17121 Stockholm, Sweden – sequence: 25 givenname: Cecilia orcidid: 0000-0001-5611-1015 surname: Lindskog fullname: Lindskog, Cecilia organization: Department of Immunology, Genetics and Pathology, Uppsala University, 751 85 Uppsala, Sweden – sequence: 26 givenname: Fredrik orcidid: 0000-0003-0703-3940 surname: Pontén fullname: Pontén, Fredrik organization: Department of Immunology, Genetics and Pathology, Uppsala University, 751 85 Uppsala, Sweden – sequence: 27 givenname: Yonglun orcidid: 0000-0002-0007-7759 surname: Luo fullname: Luo, Yonglun organization: Department of Biomedicine, Aarhus University, 80000 Aarhus, Denmark – sequence: 28 givenname: Tomas surname: Hökfelt fullname: Hökfelt, Tomas organization: Department of Neuroscience, Karolinska Institutet, 171 77 Stockholm, Sweden – sequence: 29 givenname: Mathias orcidid: 0000-0002-4858-8056 surname: Uhlén fullname: Uhlén, Mathias email: mathias.uhlen@scilifelab.se, jan.mulder@ki.se organization: Department of Protein Science, Science for Life Laboratory, KTH-Royal Institute of Technology, 17121 Stockholm, Sweden – sequence: 30 givenname: Jan orcidid: 0000-0003-3717-5018 surname: Mulder fullname: Mulder, Jan email: mathias.uhlen@scilifelab.se, jan.mulder@ki.se organization: Department of Neuroscience, Karolinska Institutet, 171 77 Stockholm, Sweden. mathias.uhlen@scilifelab.se jan.mulder@ki.se
BackLink	https://www.ncbi.nlm.nih.gov/pubmed/32139519$$D View this record in MEDLINE/PubMed
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Copyright	Copyright © 2020 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.
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Snippet	The brain, with its diverse physiology and intricate cellular organization, is the most complex organ of the mammalian body. To expand our basic understanding...
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SubjectTerms	Animals Atlases as Topic Brain - physiology Datasets as Topic Female Gene Expression Regulation Humans Male Mice Mice, Inbred C57BL Nerve Tissue Proteins - genetics Organ Specificity - genetics Species Specificity Swine Transcriptome
Title	An atlas of the protein-coding genes in the human, pig, and mouse brain
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