Perspective on taxonomic classification of uncultivated viruses
[Display omitted] Historically, virus taxonomy has been limited to describing viruses that were readily cultivated in the laboratory or emerging in natural biomes. Metagenomic analyses, single-particle sequencing, and database mining efforts have yielded new sequence data on an astounding number of...
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| Veröffentlicht in: | Current opinion in virology Jg. 51; H. C; S. 207 - 215 |
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Elsevier B.V
01.12.2021
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| Abstract | [Display omitted]
Historically, virus taxonomy has been limited to describing viruses that were readily cultivated in the laboratory or emerging in natural biomes. Metagenomic analyses, single-particle sequencing, and database mining efforts have yielded new sequence data on an astounding number of previously unknown viruses. As metagenomes are relatively free of biases, these data provide an unprecedented insight into the vastness of the virosphere, but to properly value the extent of this diversity it is critical that the viruses are taxonomically classified. Inclusion of uncultivated viruses has already improved the process as well as the understanding of the taxa, viruses, and their evolutionary relationships. The continuous development and testing of computational tools will be required to maintain a dynamic virus taxonomy that can accommodate the new discoveries. |
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| AbstractList | Historically, virus taxonomy has been limited to describing viruses that were readily cultivated in the laboratory or emerging in natural biomes. Metagenomic analyses, single-particle sequencing, and database mining efforts have yielded new sequence data on an astounding number of previously unknown viruses. As metagenomes are relatively free of biases, these data provide an unprecedented insight into the vastness of the virosphere, but to properly value the extent of this diversity it is critical that the viruses are taxonomically classified. Inclusion of uncultivated viruses has already improved the process as well as the understanding of the taxa, viruses, and their evolutionary relationships. The continuous development and testing of computational tools will be required to maintain a dynamic virus taxonomy that can accommodate the new discoveries.Historically, virus taxonomy has been limited to describing viruses that were readily cultivated in the laboratory or emerging in natural biomes. Metagenomic analyses, single-particle sequencing, and database mining efforts have yielded new sequence data on an astounding number of previously unknown viruses. As metagenomes are relatively free of biases, these data provide an unprecedented insight into the vastness of the virosphere, but to properly value the extent of this diversity it is critical that the viruses are taxonomically classified. Inclusion of uncultivated viruses has already improved the process as well as the understanding of the taxa, viruses, and their evolutionary relationships. The continuous development and testing of computational tools will be required to maintain a dynamic virus taxonomy that can accommodate the new discoveries. [Display omitted] Historically, virus taxonomy has been limited to describing viruses that were readily cultivated in the laboratory or emerging in natural biomes. Metagenomic analyses, single-particle sequencing, and database mining efforts have yielded new sequence data on an astounding number of previously unknown viruses. As metagenomes are relatively free of biases, these data provide an unprecedented insight into the vastness of the virosphere, but to properly value the extent of this diversity it is critical that the viruses are taxonomically classified. Inclusion of uncultivated viruses has already improved the process as well as the understanding of the taxa, viruses, and their evolutionary relationships. The continuous development and testing of computational tools will be required to maintain a dynamic virus taxonomy that can accommodate the new discoveries. Historically, virus taxonomy has been limited to describing viruses that were readily cultivated in the laboratory or emerging in natural biomes. Metagenomic analyses, single-particle sequencing, and database mining efforts have yielded new sequence data on an astounding number of previously unknown viruses. As metagenomes are relatively free of biases, these data provide an unprecedented insight into the vastness of the virosphere, but to properly value the extent of this diversity it is critical that the viruses are taxonomically classified. Inclusion of uncultivated viruses has already improved the process as well as the understanding of the taxa, viruses, and their evolutionary relationships. The continuous development and testing of computational tools will be required to maintain a dynamic virus taxonomy that can accommodate the new discoveries. |
| Author | Muñoz, Alejandro Reyes Adriaenssens, Evelien M Edwards, Robert A Varsani, Arvind Simmonds, Peter Lefkowitz, Elliot J Tong, Yigang Lood, Cédric Dutilh, Bas E Krupovic, Mart Sullivan, Matthew B Brister, J Rodney Sabanadzovic, Sead Rubino, Luisa Roux, Simon Kuhn, Jens H |
| Author_xml | – sequence: 1 givenname: Bas E orcidid: 0000-0003-2329-7890 surname: Dutilh fullname: Dutilh, Bas E email: bedutilh@gmail.com organization: Theoretical Biology and Bioinformatics, Science for Life, Utrecht University, Padualaan 8, 3584 CH, Utrecht, The Netherlands – sequence: 2 givenname: Arvind orcidid: 0000-0003-4111-2415 surname: Varsani fullname: Varsani, Arvind organization: The Biodesign Center of Fundamental and Applied Microbiomics, School of Life Sciences, Center for Evolution and Medicine, Arizona State University, Tempe, AZ 85287, USA – sequence: 3 givenname: Yigang surname: Tong fullname: Tong, Yigang organization: Beijing Advanced Innovation Centre for Soft Matter Science and Engineering, College of Life Science and Technology, Beijing University of Chemical Technology, Beijing, 100029, China – sequence: 4 givenname: Peter surname: Simmonds fullname: Simmonds, Peter organization: Nuffield Department of Medicine, University of Oxford, Peter Medawar Building, South Parks Road, Oxford, OX1 3SY, UK – sequence: 5 givenname: Sead orcidid: 0000-0002-2995-2633 surname: Sabanadzovic fullname: Sabanadzovic, Sead organization: Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, MS 39762, USA – sequence: 6 givenname: Luisa orcidid: 0000-0002-2073-2415 surname: Rubino fullname: Rubino, Luisa organization: Istituto per la Protezione Sostenibile delle Piante, Consiglio Nazionale delle Ricerche, Bari, Italy – sequence: 7 givenname: Simon orcidid: 0000-0002-5831-5895 surname: Roux fullname: Roux, Simon organization: DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA – sequence: 8 givenname: Alejandro Reyes surname: Muñoz fullname: Muñoz, Alejandro Reyes organization: Max Planck Tandem Group in Computational Biology, Department of Biological Sciences, Universidad de los Andes, Bogotá, Colombia – sequence: 9 givenname: Cédric orcidid: 0000-0001-7826-3378 surname: Lood fullname: Lood, Cédric organization: Department of Microbial and Molecular Systems, KU Leuven, Kasteelpark Arenberg 23, 3001, Leuven, Belgium – sequence: 10 givenname: Elliot J orcidid: 0000-0002-4748-4925 surname: Lefkowitz fullname: Lefkowitz, Elliot J organization: Department of Microbiology, University of Alabama at Birmingham, Birmingham, AL 35294, USA – sequence: 11 givenname: Jens H orcidid: 0000-0002-7800-6045 surname: Kuhn fullname: Kuhn, Jens H organization: Integrated Research Facility at Fort Detrick, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Fort Detrick, Frederick, MD 21702, USA – sequence: 12 givenname: Mart orcidid: 0000-0001-5486-0098 surname: Krupovic fullname: Krupovic, Mart organization: Institut Pasteur, Université de Paris, Archaeal Virology Unit, F-75015, Paris, France – sequence: 13 givenname: Robert A orcidid: 0000-0001-8383-8949 surname: Edwards fullname: Edwards, Robert A organization: College of Science and Engineering, Flinders University, Bedford Park, SA 5042, Australia – sequence: 14 givenname: J Rodney orcidid: 0000-0002-2249-975X surname: Brister fullname: Brister, J Rodney organization: National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda MD 20894, USA – sequence: 15 givenname: Evelien M orcidid: 0000-0003-4826-5406 surname: Adriaenssens fullname: Adriaenssens, Evelien M organization: Quadram Institute Bioscience, Norwich Research Park, NR4 7UQ, Norwich, UK – sequence: 16 givenname: Matthew B surname: Sullivan fullname: Sullivan, Matthew B organization: Departments of Microbiology and Civil, Environmental, and Geodetic Engineering, Ohio State University, Columbus, OH, USA |
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Historically, virus taxonomy has been limited to describing viruses that were readily cultivated in the laboratory or emerging in natural... Historically, virus taxonomy has been limited to describing viruses that were readily cultivated in the laboratory or emerging in natural biomes. Metagenomic... |
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