SciPipe: A workflow library for agile development of complex and dynamic bioinformatics pipelines

The complex nature of biological data has driven the development of specialized software tools. Scientific workflow management systems simplify the assembly of such tools into pipelines, assist with job automation, and aid reproducibility of analyses. Many contemporary workflow tools are specialized...

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Bibliographic Details
Published in:	Gigascience Vol. 8; no. 5
Main Authors:	Lampa, Samuel, Dahlö, Martin, Alvarsson, Jonathan, Spjuth, Ola
Format:	Journal Article
Language:	English
Published:	United States Oxford University Press 01.05.2019
Subjects:	Application programming interface Automation Bioinformatics Bioinformatik Computational Biology Data logging Flow-based Programming Gene Library Genomics Golang Informatics Learning algorithms Libraries Machine Learning Nested loops Parameterization Pipelines Programming Languages Reproducibility Reusable components Scientific Workflow Management Systems Software Task scheduling Technical Note Transcriptomics Workflow Workflow management systems Workflow software Workflow tools Workflows Golang pipelines flow-based programming reproducibility scientific workflow management systems Go machine learning
ISSN:	2047-217X, 2047-217X
Online Access:	Get full text
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