Characterization of Begomoviruses Sampled during Severe Epidemics in Tomato Cultivars Carrying the Ty-1 Gene
Tomato yellow leaf curl virus (TYLCV, genus Begomovirus, family Geminiviridae) is a major species that causes a tomato disease for which resistant tomato hybrids (mainly carriers of the Ty-1/Ty-3 gene) are being used widely. We have characterized begomoviruses severely affecting resistant tomato cro...
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| Vydané v: | International journal of molecular sciences Ročník 19; číslo 9; s. 2614 |
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| Hlavní autori: | , , , , , , , , |
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| Jazyk: | English |
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03.09.2018
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| Abstract | Tomato yellow leaf curl virus (TYLCV, genus Begomovirus, family Geminiviridae) is a major species that causes a tomato disease for which resistant tomato hybrids (mainly carriers of the Ty-1/Ty-3 gene) are being used widely. We have characterized begomoviruses severely affecting resistant tomato crops in Southeast Spain. Circular DNA was prepared from samples by rolling circle amplification, and sequenced by massive sequencing (2015) or cloning and Sanger sequencing (2016). Thus, 23 complete sequences were determined, all belonging to the TYLCV Israel strain (TYLCV-IL). Massive sequencing also revealed the absence of other geminiviral and beta-satellite sequences. A phylogenetic analysis showed that the Spanish isolates belonged to two groups, one related to early TYLCV-IL isolates in the area (Group 1), and another (Group 2) closely related to El Jadida (Morocco) isolates, suggesting a recent introduction. The most parsimonious evolutionary scenario suggested that the TYLCV isolates of Group 2 are back recombinant isolates derived from TYLCV-IS76, a recombinant virus currently predominating in Moroccan epidemics. Thus, an infectious Group 2 clone (TYLCV-Mu15) was constructed and used in in planta competition assays against TYLCV-IS76. TYLCV-Mu15 predominated in single infections, whereas TYLCV-IS76 did so in mixed infections, providing credibility to a scenario of co-occurrence of both types of isolates. |
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| AbstractList | Tomato yellow leaf curl virus (TYLCV, genus Begomovirus, family Geminiviridae) is a major species that causes a tomato disease for which resistant tomato hybrids (mainly carriers of the Ty-1/Ty-3 gene) are being used widely. We have characterized begomoviruses severely affecting resistant tomato crops in Southeast Spain. Circular DNA was prepared from samples by rolling circle amplification, and sequenced by massive sequencing (2015) or cloning and Sanger sequencing (2016). Thus, 23 complete sequences were determined, all belonging to the TYLCV Israel strain (TYLCV-IL). Massive sequencing also revealed the absence of other geminiviral and beta-satellite sequences. A phylogenetic analysis showed that the Spanish isolates belonged to two groups, one related to early TYLCV-IL isolates in the area (Group 1), and another (Group 2) closely related to El Jadida (Morocco) isolates, suggesting a recent introduction. The most parsimonious evolutionary scenario suggested that the TYLCV isolates of Group 2 are back recombinant isolates derived from TYLCV-IS76, a recombinant virus currently predominating in Moroccan epidemics. Thus, an infectious Group 2 clone (TYLCV-Mu15) was constructed and used in in planta competition assays against TYLCV-IS76. TYLCV-Mu15 predominated in single infections, whereas TYLCV-IS76 did so in mixed infections, providing credibility to a scenario of co-occurrence of both types of isolates. Tomato yellow leaf curl virus (TYLCV, genus Begomovirus, family Geminiviridae) is a major species that causes a tomato disease for which resistant tomato hybrids (mainly carriers of the Ty-1/Ty-3 gene) are being used widely. We have characterized begomoviruses severely affecting resistant tomato crops in Southeast Spain. Circular DNA was prepared from samples by rolling circle amplification, and sequenced by massive sequencing (2015) or cloning and Sanger sequencing (2016). Thus, 23 complete sequences were determined, all belonging to the TYLCV Israel strain (TYLCV-IL). Massive sequencing also revealed the absence of other geminiviral and beta-satellite sequences. A phylogenetic analysis showed that the Spanish isolates belonged to two groups, one related to early TYLCV-IL isolates in the area (Group 1), and another (Group 2) closely related to El Jadida (Morocco) isolates, suggesting a recent introduction. The most parsimonious evolutionary scenario suggested that the TYLCV isolates of Group 2 are back recombinant isolates derived from TYLCV-IS76, a recombinant virus currently predominating in Moroccan epidemics. Thus, an infectious Group 2 clone (TYLCV-Mu15) was constructed and used in in planta competition assays against TYLCV-IS76. TYLCV-Mu15 predominated in single infections, whereas TYLCV-IS76 did so in mixed infections, providing credibility to a scenario of co-occurrence of both types of isolates.Tomato yellow leaf curl virus (TYLCV, genus Begomovirus, family Geminiviridae) is a major species that causes a tomato disease for which resistant tomato hybrids (mainly carriers of the Ty-1/Ty-3 gene) are being used widely. We have characterized begomoviruses severely affecting resistant tomato crops in Southeast Spain. Circular DNA was prepared from samples by rolling circle amplification, and sequenced by massive sequencing (2015) or cloning and Sanger sequencing (2016). Thus, 23 complete sequences were determined, all belonging to the TYLCV Israel strain (TYLCV-IL). Massive sequencing also revealed the absence of other geminiviral and beta-satellite sequences. A phylogenetic analysis showed that the Spanish isolates belonged to two groups, one related to early TYLCV-IL isolates in the area (Group 1), and another (Group 2) closely related to El Jadida (Morocco) isolates, suggesting a recent introduction. The most parsimonious evolutionary scenario suggested that the TYLCV isolates of Group 2 are back recombinant isolates derived from TYLCV-IS76, a recombinant virus currently predominating in Moroccan epidemics. Thus, an infectious Group 2 clone (TYLCV-Mu15) was constructed and used in in planta competition assays against TYLCV-IS76. TYLCV-Mu15 predominated in single infections, whereas TYLCV-IS76 did so in mixed infections, providing credibility to a scenario of co-occurrence of both types of isolates. (TYLCV, genus Begomovirus, family Geminiviridae) is a major species that causes a tomato disease for which resistant tomato hybrids (mainly carriers of the / gene) are being used widely. We have characterized begomoviruses severely affecting resistant tomato crops in Southeast Spain. Circular DNA was prepared from samples by rolling circle amplification, and sequenced by massive sequencing (2015) or cloning and Sanger sequencing (2016). Thus, 23 complete sequences were determined, all belonging to the TYLCV Israel strain (TYLCV-IL). Massive sequencing also revealed the absence of other geminiviral and beta-satellite sequences. A phylogenetic analysis showed that the Spanish isolates belonged to two groups, one related to early TYLCV-IL isolates in the area (Group 1), and another (Group 2) closely related to El Jadida (Morocco) isolates, suggesting a recent introduction. The most parsimonious evolutionary scenario suggested that the TYLCV isolates of Group 2 are back recombinant isolates derived from TYLCV-IS76, a recombinant virus currently predominating in Moroccan epidemics. Thus, an infectious Group 2 clone (TYLCV-Mu15) was constructed and used in in planta competition assays against TYLCV-IS76. TYLCV-Mu15 predominated in single infections, whereas TYLCV-IS76 did so in mixed infections, providing credibility to a scenario of co-occurrence of both types of isolates. |
| Author | Juárez, Miguel Hernando, Yolanda Urbino, Cica Agüero, Jesús Peterschmitt, Michel Aranda, Miguel A. Gómez-Aix, Cristina Donaire, Livia Torre, Covadonga |
| AuthorAffiliation | 2 Centro de Edafología y Biología Aplicada del Segura (CEBAS)-CSIC, Departamento de Biología del Estrés y Patología Vegetal, P.O. Box 164, 30100 Murcia, Spain; ldonaire@cebas.csic.es 1 Abiopep S.L., Departamento de I + D + i, Parque Científico de Murcia, Ctra. de Madrid, Km 388, Complejo de Espinardo, Edf. R, 2°, 30100 Murcia, Spain; ctorre@abiopep.com (C.T.); cgaix@abiopep.com (C.G.-A.); yh.saiz@abiopep.com (Y.H.); jaguero@abiopep.com (J.A.) 4 Centre de Coopération Internationale en Recherche Agronomique Pour le Développement (CIRAD), UMR-BGPI, Equipe Interactions Virus-Insecte-Plante, TA A-54/K, Campus International de Baillarguet, CEDEX 5, 34398 Monptellier, France; michel.peterschmitt@cirad.fr (M.P.); cica.urbino@cirad.fr (C.U.) 3 Escuela Politécnica Superior de Orihuela, Universidad Miguel Hernández de Elche, Ctra. de Beniel, Km 3.2, 03312 Alicante, Spain; miguel.juarez@umh.es |
| AuthorAffiliation_xml | – name: 4 Centre de Coopération Internationale en Recherche Agronomique Pour le Développement (CIRAD), UMR-BGPI, Equipe Interactions Virus-Insecte-Plante, TA A-54/K, Campus International de Baillarguet, CEDEX 5, 34398 Monptellier, France; michel.peterschmitt@cirad.fr (M.P.); cica.urbino@cirad.fr (C.U.) – name: 2 Centro de Edafología y Biología Aplicada del Segura (CEBAS)-CSIC, Departamento de Biología del Estrés y Patología Vegetal, P.O. Box 164, 30100 Murcia, Spain; ldonaire@cebas.csic.es – name: 3 Escuela Politécnica Superior de Orihuela, Universidad Miguel Hernández de Elche, Ctra. de Beniel, Km 3.2, 03312 Alicante, Spain; miguel.juarez@umh.es – name: 1 Abiopep S.L., Departamento de I + D + i, Parque Científico de Murcia, Ctra. de Madrid, Km 388, Complejo de Espinardo, Edf. R, 2°, 30100 Murcia, Spain; ctorre@abiopep.com (C.T.); cgaix@abiopep.com (C.G.-A.); yh.saiz@abiopep.com (Y.H.); jaguero@abiopep.com (J.A.) |
| Author_xml | – sequence: 1 givenname: Covadonga surname: Torre fullname: Torre, Covadonga – sequence: 2 givenname: Livia surname: Donaire fullname: Donaire, Livia – sequence: 3 givenname: Cristina surname: Gómez-Aix fullname: Gómez-Aix, Cristina – sequence: 4 givenname: Miguel surname: Juárez fullname: Juárez, Miguel – sequence: 5 givenname: Michel surname: Peterschmitt fullname: Peterschmitt, Michel – sequence: 6 givenname: Cica surname: Urbino fullname: Urbino, Cica – sequence: 7 givenname: Yolanda surname: Hernando fullname: Hernando, Yolanda – sequence: 8 givenname: Jesús orcidid: 0000-0002-7854-2008 surname: Agüero fullname: Agüero, Jesús – sequence: 9 givenname: Miguel A. surname: Aranda fullname: Aranda, Miguel A. |
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| Snippet | Tomato yellow leaf curl virus (TYLCV, genus Begomovirus, family Geminiviridae) is a major species that causes a tomato disease for which resistant tomato... (TYLCV, genus Begomovirus, family Geminiviridae) is a major species that causes a tomato disease for which resistant tomato hybrids (mainly carriers of the /... |
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| SubjectTerms | Begomovirus - pathogenicity Crop diseases Crops Cultivars Deoxyribonucleic acid DNA DNA methylation Epidemics Genomes Life Sciences Lycopersicon esculentum - metabolism Lycopersicon esculentum - virology Mitochondrial DNA Phylogenetics Plant Diseases - virology Plant Proteins - metabolism RNA polymerase Tomatoes Viruses |
| Title | Characterization of Begomoviruses Sampled during Severe Epidemics in Tomato Cultivars Carrying the Ty-1 Gene |
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