Target highlights in CASP13: Experimental target structures through the eyes of their authors

The functional and biological significance of selected CASP13 targets are described by the authors of the structures. The structural biologists discuss the most interesting structural features of the target proteins and assess whether these features were correctly reproduced in the predictions submi...

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Vydáno v:Proteins, structure, function, and bioinformatics Ročník 87; číslo 12; s. 1037 - 1057
Hlavní autoři: Lepore, Rosalba, Kryshtafovych, Andriy, Alahuhta, Markus, Veraszto, Harshul A., Bomble, Yannick J., Bufton, Joshua C., Bullock, Alex N., Caba, Cody, Cao, Hongnan, Davies, Owen R., Desfosses, Ambroise, Dunne, Matthew, Fidelis, Krzysztof, Goulding, Celia W., Gurusaran, Manickam, Gutsche, Irina, Harding, Christopher J., Hartmann, Marcus D., Hayes, Christopher S., Joachimiak, Andrzej, Leiman, Petr G., Loppnau, Peter, Lovering, Andrew L., Lunin, Vladimir V., Michalska, Karolina, Mir‐Sanchis, Ignacio, Mitra, AK, Moult, John, Phillips Jr, George N., Pinkas, Daniel M., Rice, Phoebe A., Tong, Yufeng, Topf, Maya, Walton, Jonathan D., Schwede, Torsten
Médium: Journal Article
Jazyk:angličtina
Vydáno: Hoboken, USA John Wiley & Sons, Inc 01.12.2019
Wiley Subscription Services, Inc
Wiley
Témata:
Arabidopsis - chemistry
Arabidopsis - ultrastructure
Bacterial Proteins - chemistry
Bacterial Proteins - ultrastructure
BASIC BIOLOGICAL SCIENCES
Biochemistry, Molecular Biology
CASP
Casp Experiment Overview
CASP, protein structure prediction
Computational Biology
cryo-EM
Crystallography, X-Ray
Humans
Life Sciences
Models, Molecular
Protein Conformation
protein structure prediction
Proteins - chemistry
Proteins - genetics
Proteins - ultrastructure
Structural Biology
X-ray crystallography
CASP, protein structure prediction
X-ray crystallography
cryo-EM
WD40-repeat
CASP
WDR
D-xylose CASP
PPI
Xyl
D-glucose
D-galactose
DNA damage repair
RING finger and WD repeat domain-containing protein 3
community wide experiment on the Critical Assessment of Techniques for Protein Structure Prediction
DDR
Gal
RFWD3
protein-protein interaction
protein structure prediction
Glc
ISSN:0887-3585, 1097-0134, 1097-0134
On-line přístup:Získat plný text
Tagy: Přidat tag
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Abstract The functional and biological significance of selected CASP13 targets are described by the authors of the structures. The structural biologists discuss the most interesting structural features of the target proteins and assess whether these features were correctly reproduced in the predictions submitted to the CASP13 experiment.
AbstractList The functional and biological significance of selected CASP13 targets are described by the authors of the structures. The structural biologists discuss the most interesting structural features of the target proteins and assess whether these features were correctly reproduced in the predictions submitted to the CASP13 experiment.
The functional and biological significance of selected CASP13 targets are described by the authors of the structures. The structural biologists discuss the most interesting structural features of the target proteins and assess whether these features were correctly reproduced in the predictions submitted to the CASP13 experiment.The functional and biological significance of selected CASP13 targets are described by the authors of the structures. The structural biologists discuss the most interesting structural features of the target proteins and assess whether these features were correctly reproduced in the predictions submitted to the CASP13 experiment.
Author Topf, Maya
Schwede, Torsten
Desfosses, Ambroise
Gurusaran, Manickam
Hayes, Christopher S.
Joachimiak, Andrzej
Leiman, Petr G.
Rice, Phoebe A.
Walton, Jonathan D.
Caba, Cody
Harding, Christopher J.
Bullock, Alex N.
Bomble, Yannick J.
Fidelis, Krzysztof
Mir‐Sanchis, Ignacio
Loppnau, Peter
Lovering, Andrew L.
Hartmann, Marcus D.
Phillips Jr, George N.
Lepore, Rosalba
Goulding, Celia W.
Alahuhta, Markus
Pinkas, Daniel M.
Davies, Owen R.
Michalska, Karolina
Veraszto, Harshul A.
Moult, John
Mitra, AK
Kryshtafovych, Andriy
Lunin, Vladimir V.
Dunne, Matthew
Cao, Hongnan
Tong, Yufeng
Bufton, Joshua C.
Gutsche, Irina
AuthorAffiliation 12 Institut de Biologie Structurale Université Grenoble Alpes, CEA, CNRS Grenoble France
18 Department of Biochemistry and Molecular Biology University of Chicago Chicago Illinois
8 Department of BioSciences Rice University Houston Texas
23 Institute of Structural and Molecular Biology, Birkbeck University College London London UK
10 Institute for Cell and Molecular Biosciences, Faculty of Medical Sciences Newcastle University Newcastle upon Tyne UK
6 School of Biochemistry University of Bristol Bristol UK
21 Department of Biochemistry and Molecular Biology The University of Chicago Chicago Illinois
4 Department of Protein Evolution Max Planck Institute for Developmental Biology Tübingen Germany
9 Great Lakes Bioenergy Research Center University of Wisconsin Madison Wisconsin
14 Department of Molecular Biology and Biochemistry; Pharmaceutical Sciences University of California Irvine Irvine California
22 Institute for Bioscience and Biotechnology Research, Department of Cell Biology and Molecular
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BackLink https://www.ncbi.nlm.nih.gov/pubmed/31442339$$D View this record in MEDLINE/PubMed
https://hal.univ-grenoble-alpes.fr/hal-02420036$$DView record in HAL
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Copyright 2019 The Authors. published by Wiley Periodicals, Inc.
2019 The Authors. Proteins: Structure, Function, and Bioinformatics published by Wiley Periodicals, Inc.
2019 Wiley Periodicals, Inc.
Distributed under a Creative Commons Attribution 4.0 International License
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– notice: 2019 The Authors. Proteins: Structure, Function, and Bioinformatics published by Wiley Periodicals, Inc.
– notice: 2019 Wiley Periodicals, Inc.
– notice: Distributed under a Creative Commons Attribution 4.0 International License
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ISSN 0887-3585
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Issue 12
Keywords CASP, protein structure prediction
X-ray crystallography
cryo-EM
WD40-repeat
CASP
WDR
D-xylose CASP
PPI
Xyl
D-glucose
D-galactose
DNA damage repair
RING finger and WD repeat domain-containing protein 3
community wide experiment on the Critical Assessment of Techniques for Protein Structure Prediction
DDR
Gal
RFWD3
protein-protein interaction
protein structure prediction
Glc
Language English
License Attribution
2019 The Authors. Proteins: Structure, Function, and Bioinformatics published by Wiley Periodicals, Inc.
Distributed under a Creative Commons Attribution 4.0 International License: http://creativecommons.org/licenses/by/4.0
This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
LinkModel DirectLink
MergedId FETCHMERGED-LOGICAL-c5095-bf4c4ea7e68f20b3e3a0564add9c5b58ecda9287d33a2981832a19e2eed055183
Notes Funding information
ETH Zurich, Grant/Award Number: ETH‐08 14‐1; BBSRC MIBTP studentship, Grant/Award Number: 1500753; U. S. Department of Energy, Grant/Award Numbers: DEAC02‐06CH11357, BER DEFC02‐07ER64494, DE‐AC36‐08GO28308; National Institutes of Health, Grant/Award Numbers: GM098248, GM115586, GM094585, GM117373, GM102318; Wellcome Trust and Royal Society, Grant/Award Numbers: RG170118, 104158/Z/14/Z; Wellcome, Grant/Award Number: 106169/ZZ14/Z; Innovative Medicines Initiative (EU/EFPIA), Grant/Award Number: 115766; Genome Canada; Eshelman Institute for Innovation; Canada Foundation for Innovation; Boehringer Ingelheim; Bayer Pharma AG; AbbVie; NIGMS/NIH, Grant/Award Number: GM100482
ObjectType-Article-1
SourceType-Scholarly Journals-1
ObjectType-Feature-2
content type line 14
content type line 23
NREL/JA-2700-74703
AC36-08GO28308
USDOE Office of Science (SC), Biological and Environmental Research (BER)
In memory of pioneer Dr. Jonathan Walton, who deceased on October 18, 2018.
Present address Ignacio Mir‐Sanchis, Department of Medical Biochemistry, Umeå University, Umeå Sweden and Wallenberg Centre for Molecular Medicine, Umeå University, Umeå, Sweden.
Funding information ETH Zurich, Grant/Award Number: ETH‐08 14‐1; BBSRC MIBTP studentship, Grant/Award Number: 1500753; U. S. Department of Energy, Grant/Award Numbers: DEAC02‐06CH11357, BER DEFC02‐07ER64494, DE‐AC36‐08GO28308; National Institutes of Health, Grant/Award Numbers: GM098248, GM115586, GM094585, GM117373, GM102318; Wellcome Trust and Royal Society, Grant/Award Numbers: RG170118, 104158/Z/14/Z; Wellcome, Grant/Award Number: 106169/ZZ14/Z; Innovative Medicines Initiative (EU/EFPIA), Grant/Award Number: 115766; Genome Canada; Eshelman Institute for Innovation; Canada Foundation for Innovation; Boehringer Ingelheim; Bayer Pharma AG; AbbVie; NIGMS/NIH, Grant/Award Number: GM100482
Correction added on 17 Oct 2019, after first online publication: Author name “Alok Mitra” has been updated to “AK Mitra.”
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Snippet The functional and biological significance of selected CASP13 targets are described by the authors of the structures. The structural biologists discuss the...
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StartPage 1037
SubjectTerms Arabidopsis - chemistry
Arabidopsis - ultrastructure
Bacterial Proteins - chemistry
Bacterial Proteins - ultrastructure
BASIC BIOLOGICAL SCIENCES
Biochemistry, Molecular Biology
CASP
Casp Experiment Overview
CASP, protein structure prediction
Computational Biology
cryo-EM
Crystallography, X-Ray
Humans
Life Sciences
Models, Molecular
Protein Conformation
protein structure prediction
Proteins - chemistry
Proteins - genetics
Proteins - ultrastructure
Structural Biology
X-ray crystallography
Title Target highlights in CASP13: Experimental target structures through the eyes of their authors
URI https://onlinelibrary.wiley.com/doi/abs/10.1002%2Fprot.25805
https://www.ncbi.nlm.nih.gov/pubmed/31442339
https://www.proquest.com/docview/2313440808
https://www.proquest.com/docview/2287516450
https://hal.univ-grenoble-alpes.fr/hal-02420036
https://www.osti.gov/servlets/purl/1559927
https://pubmed.ncbi.nlm.nih.gov/PMC6851490
Volume 87
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