MILK: a Python scripting interface to MAUD for automation of Rietveld analysis
Modern diffraction experiments (e.g. in situ parametric studies) present scientists with many diffraction patterns to analyze. Interactive analyses via graphical user interfaces tend to slow down obtaining quantitative results such as lattice parameters and phase fractions. Furthermore, Rietveld ref...
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| Vydáno v: | Journal of applied crystallography Ročník 56; číslo 4; s. 1277 - 1286 |
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| Hlavní autoři: | , , , , , , |
| Médium: | Journal Article |
| Jazyk: | angličtina |
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5 Abbey Square, Chester, Cheshire CH1 2HU, England
International Union of Crystallography
01.08.2023
Blackwell Publishing Ltd |
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| ISSN: | 1600-5767, 0021-8898, 1600-5767 |
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| Abstract | Modern diffraction experiments (e.g. in situ parametric studies) present scientists with many diffraction patterns to analyze. Interactive analyses via graphical user interfaces tend to slow down obtaining quantitative results such as lattice parameters and phase fractions. Furthermore, Rietveld refinement strategies (i.e. the parameter turn‐on‐off sequences) tend to be instrument specific or even specific to a given dataset, such that selection of strategies can become a bottleneck for efficient data analysis. Managing multi‐histogram datasets such as from multi‐bank neutron diffractometers or caked 2D synchrotron data presents additional challenges due to the large number of histogram‐specific parameters. To overcome these challenges in the Rietveld software Material Analysis Using Diffraction (MAUD), the MAUD Interface Language Kit (MILK) is developed along with an updated text batch interface for MAUD. The open‐source software MILK is computer‐platform independent and is packaged as a Python library that interfaces with MAUD. Using MILK, model selection (e.g. various texture or peak‐broadening models), Rietveld parameter manipulation and distributed parallel batch computing can be performed through a high‐level Python interface. A high‐level interface enables analysis workflows to be easily programmed, shared and applied to large datasets, and external tools to be integrated with MAUD. Through modification to the MAUD batch interface, plot and data exports have been improved. The resulting hierarchical folders from Rietveld refinements with MILK are compatible with Cinema: Debye–Scherrer, a tool for visualizing and inspecting the results of multi‐parameter analyses of large quantities of diffraction data. In this manuscript, the combined Python scripting and visualization capability of MILK is demonstrated with a quantitative texture and phase analysis of data collected at the HIPPO neutron diffractometer.
The MAUD Interface Language Kit (MILK) provides a Python interface to the Rietveld software MAUD, enabling scriptable refinements. The MILK framework includes parallel computing and folder management which enable high‐throughput Rietveld analysis, visualization and validation. |
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| AbstractList | Modern diffraction experiments (e.g. in situ parametric studies) present scientists with many diffraction patterns to analyze. Interactive analyses via graphical user interfaces tend to slow down obtaining quantitative results such as lattice parameters and phase fractions. Furthermore, Rietveld refinement strategies (i.e. the parameter turn‐on‐off sequences) tend to be instrument specific or even specific to a given dataset, such that selection of strategies can become a bottleneck for efficient data analysis. Managing multi‐histogram datasets such as from multi‐bank neutron diffractometers or caked 2D synchrotron data presents additional challenges due to the large number of histogram‐specific parameters. To overcome these challenges in the Rietveld software Material Analysis Using Diffraction (MAUD), the MAUD Interface Language Kit (MILK) is developed along with an updated text batch interface for MAUD. The open‐source software MILK is computer‐platform independent and is packaged as a Python library that interfaces with MAUD. Using MILK, model selection (e.g. various texture or peak‐broadening models), Rietveld parameter manipulation and distributed parallel batch computing can be performed through a high‐level Python interface. A high‐level interface enables analysis workflows to be easily programmed, shared and applied to large datasets, and external tools to be integrated with MAUD. Through modification to the MAUD batch interface, plot and data exports have been improved. The resulting hierarchical folders from Rietveld refinements with MILK are compatible with Cinema: Debye–Scherrer, a tool for visualizing and inspecting the results of multi‐parameter analyses of large quantities of diffraction data. In this manuscript, the combined Python scripting and visualization capability of MILK is demonstrated with a quantitative texture and phase analysis of data collected at the HIPPO neutron diffractometer. Modern diffraction experiments (e.g. in situ parametric studies) present scientists with many diffraction patterns to analyze. Interactive analyses via graphical user interfaces tend to slow down obtaining quantitative results such as lattice parameters and phase fractions. Furthermore, Rietveld refinement strategies (i.e. the parameter turn‐on‐off sequences) tend to be instrument specific or even specific to a given dataset, such that selection of strategies can become a bottleneck for efficient data analysis. Managing multi‐histogram datasets such as from multi‐bank neutron diffractometers or caked 2D synchrotron data presents additional challenges due to the large number of histogram‐specific parameters. To overcome these challenges in the Rietveld software Material Analysis Using Diffraction (MAUD), the MAUD Interface Language Kit (MILK) is developed along with an updated text batch interface for MAUD. The open‐source software MILK is computer‐platform independent and is packaged as a Python library that interfaces with MAUD. Using MILK, model selection (e.g. various texture or peak‐broadening models), Rietveld parameter manipulation and distributed parallel batch computing can be performed through a high‐level Python interface. A high‐level interface enables analysis workflows to be easily programmed, shared and applied to large datasets, and external tools to be integrated with MAUD. Through modification to the MAUD batch interface, plot and data exports have been improved. The resulting hierarchical folders from Rietveld refinements with MILK are compatible with Cinema: Debye–Scherrer, a tool for visualizing and inspecting the results of multi‐parameter analyses of large quantities of diffraction data. In this manuscript, the combined Python scripting and visualization capability of MILK is demonstrated with a quantitative texture and phase analysis of data collected at the HIPPO neutron diffractometer. The MAUD Interface Language Kit (MILK) provides a Python interface to the Rietveld software MAUD, enabling scriptable refinements. The MILK framework includes parallel computing and folder management which enable high‐throughput Rietveld analysis, visualization and validation. Modern diffraction experiments ( parametric studies) present scientists with many diffraction patterns to analyze. Interactive analyses via graphical user interfaces tend to slow down obtaining quantitative results such as lattice parameters and phase fractions. Furthermore, Rietveld refinement strategies ( the parameter turn-on-off sequences) tend to be instrument specific or even specific to a given dataset, such that selection of strategies can become a bottleneck for efficient data analysis. Managing multi-histogram datasets such as from multi-bank neutron diffractometers or caked 2D synchrotron data presents additional challenges due to the large number of histogram-specific parameters. To overcome these challenges in the Rietveld software ( ), the ( ) is developed along with an updated text batch interface for . The open-source software is computer-platform independent and is packaged as a Python library that interfaces with . Using , model selection ( various texture or peak-broadening models), Rietveld parameter manipulation and distributed parallel batch computing can be performed through a high-level Python interface. A high-level interface enables analysis workflows to be easily programmed, shared and applied to large datasets, and external tools to be integrated with . Through modification to the batch interface, plot and data exports have been improved. The resulting hierarchical folders from Rietveld refinements with are compatible with , a tool for visualizing and inspecting the results of multi-parameter analyses of large quantities of diffraction data. In this manuscript, the combined Python scripting and visualization capability of is demonstrated with a quantitative texture and phase analysis of data collected at the HIPPO neutron diffractometer. The MAUD Interface Language Kit (MILK) provides a Python interface to the Rietveld software MAUD, enabling scriptable refinements. The MILK framework includes parallel computing and folder management which enable high-throughput Rietveld analysis, visualization and validation. Modern diffraction experiments (e.g. in situ parametric studies) present scientists with many diffraction patterns to analyze. Interactive analyses via graphical user interfaces tend to slow down obtaining quantitative results such as lattice parameters and phase fractions. Furthermore, Rietveld refinement strategies (i.e. the parameter turn-on-off sequences) tend to be instrument specific or even specific to a given dataset, such that selection of strategies can become a bottleneck for efficient data analysis. Managing multi-histogram datasets such as from multi-bank neutron diffractometers or caked 2D synchrotron data presents additional challenges due to the large number of histogram-specific parameters. To overcome these challenges in the Rietveld software Material Analysis Using Diffraction (MAUD), the MAUD Interface Language Kit (MILK) is developed along with an updated text batch interface for MAUD. The open-source software MILK is computer-platform independent and is packaged as a Python library that interfaces with MAUD. Using MILK, model selection (e.g. various texture or peak-broadening models), Rietveld parameter manipulation and distributed parallel batch computing can be performed through a high-level Python interface. A high-level interface enables analysis workflows to be easily programmed, shared and applied to large datasets, and external tools to be integrated with MAUD. Through modification to the MAUD batch interface, plot and data exports have been improved. The resulting hierarchical folders from Rietveld refinements with MILK are compatible with Cinema: Debye–Scherrer, a tool for visualizing and inspecting the results of multi-parameter analyses of large quantities of diffraction data. In this manuscript, the combined Python scripting and visualization capability of MILK is demonstrated with a quantitative texture and phase analysis of data collected at the HIPPO neutron diffractometer. Modern diffraction experiments (e.g. in situ parametric studies) present scientists with many diffraction patterns to analyze. Interactive analyses via graphical user interfaces tend to slow down obtaining quantitative results such as lattice parameters and phase fractions. Furthermore, Rietveld refinement strategies (i.e. the parameter turn-on-off sequences) tend to be instrument specific or even specific to a given dataset, such that selection of strategies can become a bottleneck for efficient data analysis. Managing multi-histogram datasets such as from multi-bank neutron diffractometers or caked 2D synchrotron data presents additional challenges due to the large number of histogram-specific parameters. To overcome these challenges in the Rietveld software Material Analysis Using Diffraction (MAUD), the MAUD Interface Language Kit (MILK) is developed along with an updated text batch interface for MAUD. The open-source software MILK is computer-platform independent and is packaged as a Python library that interfaces with MAUD. Using MILK, model selection (e.g. various texture or peak-broadening models), Rietveld parameter manipulation and distributed parallel batch computing can be performed through a high-level Python interface. A high-level interface enables analysis workflows to be easily programmed, shared and applied to large datasets, and external tools to be integrated with MAUD. Through modification to the MAUD batch interface, plot and data exports have been improved. The resulting hierarchical folders from Rietveld refinements with MILK are compatible with Cinema: Debye-Scherrer, a tool for visualizing and inspecting the results of multi-parameter analyses of large quantities of diffraction data. In this manuscript, the combined Python scripting and visualization capability of MILK is demonstrated with a quantitative texture and phase analysis of data collected at the HIPPO neutron diffractometer.Modern diffraction experiments (e.g. in situ parametric studies) present scientists with many diffraction patterns to analyze. Interactive analyses via graphical user interfaces tend to slow down obtaining quantitative results such as lattice parameters and phase fractions. Furthermore, Rietveld refinement strategies (i.e. the parameter turn-on-off sequences) tend to be instrument specific or even specific to a given dataset, such that selection of strategies can become a bottleneck for efficient data analysis. Managing multi-histogram datasets such as from multi-bank neutron diffractometers or caked 2D synchrotron data presents additional challenges due to the large number of histogram-specific parameters. To overcome these challenges in the Rietveld software Material Analysis Using Diffraction (MAUD), the MAUD Interface Language Kit (MILK) is developed along with an updated text batch interface for MAUD. The open-source software MILK is computer-platform independent and is packaged as a Python library that interfaces with MAUD. Using MILK, model selection (e.g. various texture or peak-broadening models), Rietveld parameter manipulation and distributed parallel batch computing can be performed through a high-level Python interface. A high-level interface enables analysis workflows to be easily programmed, shared and applied to large datasets, and external tools to be integrated with MAUD. Through modification to the MAUD batch interface, plot and data exports have been improved. The resulting hierarchical folders from Rietveld refinements with MILK are compatible with Cinema: Debye-Scherrer, a tool for visualizing and inspecting the results of multi-parameter analyses of large quantities of diffraction data. In this manuscript, the combined Python scripting and visualization capability of MILK is demonstrated with a quantitative texture and phase analysis of data collected at the HIPPO neutron diffractometer. |
| Author | McKerns, Michael Savage, Daniel J. Lutterotti, Luca Biwer, Christopher M. Knezevic, Marko Vogel, Sven C. Bolme, Cynthia |
| Author_xml | – sequence: 1 givenname: Daniel J. surname: Savage fullname: Savage, Daniel J. email: dansavage@lanl.gov organization: Los Alamos National Laboratory – sequence: 2 givenname: Luca surname: Lutterotti fullname: Lutterotti, Luca organization: University of Trento – sequence: 3 givenname: Christopher M. surname: Biwer fullname: Biwer, Christopher M. organization: Los Alamos National Laboratory – sequence: 4 givenname: Michael surname: McKerns fullname: McKerns, Michael organization: Los Alamos National Laboratory – sequence: 5 givenname: Cynthia surname: Bolme fullname: Bolme, Cynthia organization: Los Alamos National Laboratory – sequence: 6 givenname: Marko surname: Knezevic fullname: Knezevic, Marko organization: University of New Hampshire – sequence: 7 givenname: Sven C. surname: Vogel fullname: Vogel, Sven C. organization: Los Alamos National Laboratory |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/37555231$$D View this record in MEDLINE/PubMed https://www.osti.gov/biblio/1991450$$D View this record in Osti.gov |
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| CitedBy_id | crossref_primary_10_1016_j_ceramint_2025_02_218 crossref_primary_10_1016_j_msea_2023_145754 crossref_primary_10_1107_S2053229625003237 crossref_primary_10_1016_j_mechmat_2025_105473 crossref_primary_10_1016_j_jmrt_2025_07_066 crossref_primary_10_1002_smll_202502379 crossref_primary_10_1016_j_msea_2024_146269 crossref_primary_10_3390_cryst14080716 crossref_primary_10_1007_s12540_025_01976_x crossref_primary_10_1038_s41598_025_92452_4 |
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| Keywords | MAUD Rietveld refinement diffraction software MILK |
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| SubjectTerms | Automation Computer Programs Data analysis Data transfer (computers) Datasets Diffraction Diffraction patterns diffraction software Diffractometers Graphical user interface Histograms Interfaces Lattice parameters Mathematical models MATHEMATICS AND COMPUTING MAUD MILK Neutrons Python Rietveld refinement Software Synchrotrons Texture |
| Title | MILK: a Python scripting interface to MAUD for automation of Rietveld analysis |
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