Global gene expression profile of periodontal ligament cells submitted to mechanical loading: A systematic review
•Evidence on the global gene expression of periodontal cells under static loading is scarce.•The studies on the subject show great heterogeneity in the methods implemented.•Definitive conclusions on differentially expressed molecular pathways during orthodontic tooth movement are not yet possible. T...
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| Published in: | Archives of oral biology Vol. 118; p. 104884 |
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| Main Authors: | , , , , , , |
| Format: | Journal Article |
| Language: | English |
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01.10.2020
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| ISSN: | 0003-9969, 1879-1506, 1879-1506 |
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| Abstract | •Evidence on the global gene expression of periodontal cells under static loading is scarce.•The studies on the subject show great heterogeneity in the methods implemented.•Definitive conclusions on differentially expressed molecular pathways during orthodontic tooth movement are not yet possible.
To evaluate the evidence reporting gene expression array data of human in vitro cultured periodontal ligament cells (PDLCs) submitted to static mechanical loading compared to a control group.
Systematic searches were performed in MEDLINE/PubMed, Scopus, Web of Science, Virtual Health Library, The Cochrane Library and the System for Information on Grey Literature in Europe up to June 2019. A narrative synthesis was performed to summarize differentially expressed genes (DEGs). These were grouped according to the culture method (2D or 3D), force type (compression or tension) and observation time. Additionally, gene ontology (GO) analysis was performed using the Database for Annotation Visualization and Integrated Discovery. The risk of bias (RoB) and certainty of evidence (CoE) were assessed using a modified CONSORT checklist and the GRADE tool, respectively.
Of eight studies included (all rated as having moderate RoB), only two provided the complete list of DEGs and four studies performed GO, gene network or pathways analysis. “Cell proliferation”, “cell-cell signaling”, “response to hypoxia and to mechanical stimulus” were among the significantly enriched biological processes in 3D-cultured compressed PDLCs (moderate CoE); while “collagen catabolic process”, “extracellular matrix organization” and “cell proliferation” were associated with DEGs of 3D-cultured PDLCs submitted to tension (very low CoE). Biological processes significantly enriched in 2D-cultured PDLCs under compression were “extracellular matrix organization”, “canonical glycolysis” and “glycolytic process” (very low CoE).
Genes such as NR4A2, NR4A3, NAMPT, PGK1, and REDD1 are suggested as novel biomarkers for orthodontic tooth movement. Limited amount of evidence on the complete gene expression profile and the high heterogeneity in methodologies make it impossible to obtain definite conclusions. New studies following standardized and well-designed in vitro model and reporting complete gene expression datasets are needed. |
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| AbstractList | To evaluate the evidence reporting gene expression array data of human in vitro cultured periodontal ligament cells (PDLCs) submitted to static mechanical loading compared to a control group.OBJECTIVETo evaluate the evidence reporting gene expression array data of human in vitro cultured periodontal ligament cells (PDLCs) submitted to static mechanical loading compared to a control group.Systematic searches were performed in MEDLINE/PubMed, Scopus, Web of Science, Virtual Health Library, The Cochrane Library and the System for Information on Grey Literature in Europe up to June 2019. A narrative synthesis was performed to summarize differentially expressed genes (DEGs). These were grouped according to the culture method (2D or 3D), force type (compression or tension) and observation time. Additionally, gene ontology (GO) analysis was performed using the Database for Annotation Visualization and Integrated Discovery. The risk of bias (RoB) and certainty of evidence (CoE) were assessed using a modified CONSORT checklist and the GRADE tool, respectively.DESIGNSystematic searches were performed in MEDLINE/PubMed, Scopus, Web of Science, Virtual Health Library, The Cochrane Library and the System for Information on Grey Literature in Europe up to June 2019. A narrative synthesis was performed to summarize differentially expressed genes (DEGs). These were grouped according to the culture method (2D or 3D), force type (compression or tension) and observation time. Additionally, gene ontology (GO) analysis was performed using the Database for Annotation Visualization and Integrated Discovery. The risk of bias (RoB) and certainty of evidence (CoE) were assessed using a modified CONSORT checklist and the GRADE tool, respectively.Of eight studies included (all rated as having moderate RoB), only two provided the complete list of DEGs and four studies performed GO, gene network or pathways analysis. "Cell proliferation", "cell-cell signaling", "response to hypoxia and to mechanical stimulus" were among the significantly enriched biological processes in 3D-cultured compressed PDLCs (moderate CoE); while "collagen catabolic process", "extracellular matrix organization" and "cell proliferation" were associated with DEGs of 3D-cultured PDLCs submitted to tension (very low CoE). Biological processes significantly enriched in 2D-cultured PDLCs under compression were "extracellular matrix organization", "canonical glycolysis" and "glycolytic process" (very low CoE).RESULTSOf eight studies included (all rated as having moderate RoB), only two provided the complete list of DEGs and four studies performed GO, gene network or pathways analysis. "Cell proliferation", "cell-cell signaling", "response to hypoxia and to mechanical stimulus" were among the significantly enriched biological processes in 3D-cultured compressed PDLCs (moderate CoE); while "collagen catabolic process", "extracellular matrix organization" and "cell proliferation" were associated with DEGs of 3D-cultured PDLCs submitted to tension (very low CoE). Biological processes significantly enriched in 2D-cultured PDLCs under compression were "extracellular matrix organization", "canonical glycolysis" and "glycolytic process" (very low CoE).Genes such as NR4A2, NR4A3, NAMPT, PGK1, and REDD1 are suggested as novel biomarkers for orthodontic tooth movement. Limited amount of evidence on the complete gene expression profile and the high heterogeneity in methodologies make it impossible to obtain definite conclusions. New studies following standardized and well-designed in vitro model and reporting complete gene expression datasets are needed.CONCLUSIONGenes such as NR4A2, NR4A3, NAMPT, PGK1, and REDD1 are suggested as novel biomarkers for orthodontic tooth movement. Limited amount of evidence on the complete gene expression profile and the high heterogeneity in methodologies make it impossible to obtain definite conclusions. New studies following standardized and well-designed in vitro model and reporting complete gene expression datasets are needed. To evaluate the evidence reporting gene expression array data of human in vitro cultured periodontal ligament cells (PDLCs) submitted to static mechanical loading compared to a control group. Systematic searches were performed in MEDLINE/PubMed, Scopus, Web of Science, Virtual Health Library, The Cochrane Library and the System for Information on Grey Literature in Europe up to June 2019. A narrative synthesis was performed to summarize differentially expressed genes (DEGs). These were grouped according to the culture method (2D or 3D), force type (compression or tension) and observation time. Additionally, gene ontology (GO) analysis was performed using the Database for Annotation Visualization and Integrated Discovery. The risk of bias (RoB) and certainty of evidence (CoE) were assessed using a modified CONSORT checklist and the GRADE tool, respectively. Of eight studies included (all rated as having moderate RoB), only two provided the complete list of DEGs and four studies performed GO, gene network or pathways analysis. "Cell proliferation", "cell-cell signaling", "response to hypoxia and to mechanical stimulus" were among the significantly enriched biological processes in 3D-cultured compressed PDLCs (moderate CoE); while "collagen catabolic process", "extracellular matrix organization" and "cell proliferation" were associated with DEGs of 3D-cultured PDLCs submitted to tension (very low CoE). Biological processes significantly enriched in 2D-cultured PDLCs under compression were "extracellular matrix organization", "canonical glycolysis" and "glycolytic process" (very low CoE). Genes such as NR4A2, NR4A3, NAMPT, PGK1, and REDD1 are suggested as novel biomarkers for orthodontic tooth movement. Limited amount of evidence on the complete gene expression profile and the high heterogeneity in methodologies make it impossible to obtain definite conclusions. New studies following standardized and well-designed in vitro model and reporting complete gene expression datasets are needed. •Evidence on the global gene expression of periodontal cells under static loading is scarce.•The studies on the subject show great heterogeneity in the methods implemented.•Definitive conclusions on differentially expressed molecular pathways during orthodontic tooth movement are not yet possible. To evaluate the evidence reporting gene expression array data of human in vitro cultured periodontal ligament cells (PDLCs) submitted to static mechanical loading compared to a control group. Systematic searches were performed in MEDLINE/PubMed, Scopus, Web of Science, Virtual Health Library, The Cochrane Library and the System for Information on Grey Literature in Europe up to June 2019. A narrative synthesis was performed to summarize differentially expressed genes (DEGs). These were grouped according to the culture method (2D or 3D), force type (compression or tension) and observation time. Additionally, gene ontology (GO) analysis was performed using the Database for Annotation Visualization and Integrated Discovery. The risk of bias (RoB) and certainty of evidence (CoE) were assessed using a modified CONSORT checklist and the GRADE tool, respectively. Of eight studies included (all rated as having moderate RoB), only two provided the complete list of DEGs and four studies performed GO, gene network or pathways analysis. “Cell proliferation”, “cell-cell signaling”, “response to hypoxia and to mechanical stimulus” were among the significantly enriched biological processes in 3D-cultured compressed PDLCs (moderate CoE); while “collagen catabolic process”, “extracellular matrix organization” and “cell proliferation” were associated with DEGs of 3D-cultured PDLCs submitted to tension (very low CoE). Biological processes significantly enriched in 2D-cultured PDLCs under compression were “extracellular matrix organization”, “canonical glycolysis” and “glycolytic process” (very low CoE). Genes such as NR4A2, NR4A3, NAMPT, PGK1, and REDD1 are suggested as novel biomarkers for orthodontic tooth movement. Limited amount of evidence on the complete gene expression profile and the high heterogeneity in methodologies make it impossible to obtain definite conclusions. New studies following standardized and well-designed in vitro model and reporting complete gene expression datasets are needed. |
| ArticleNumber | 104884 |
| Author | Spitz, Alice Bolognese, Ana Maria Marañón-Vásquez, Guido Artemio Masterson, Daniele Ferreira Adesse, Daniel Maia, Lucianne Cople Christovam, Ilana Oliveira |
| Author_xml | – sequence: 1 givenname: Alice surname: Spitz fullname: Spitz, Alice email: alicespitz1@gmail.com organization: Department of Pediatric Dentistry and Orthodontics, School of Dentistry, Federal University of Rio de Janeiro, Rua. Prof. Rodolpho Paulo Rocco, 325 – Cidade Universitária da Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, 21941-617, Brazil – sequence: 2 givenname: Ilana Oliveira surname: Christovam fullname: Christovam, Ilana Oliveira email: ilana.christovam@gmail.com organization: Department of Pediatric Dentistry and Orthodontics, School of Dentistry, Federal University of Rio de Janeiro, Rua. Prof. Rodolpho Paulo Rocco, 325 – Cidade Universitária da Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, 21941-617, Brazil – sequence: 3 givenname: Guido Artemio orcidid: 0000-0001-7029-0347 surname: Marañón-Vásquez fullname: Marañón-Vásquez, Guido Artemio email: guido_amv@hotmail.com, guidoartemio@ortodontia.ufrj.br organization: Department of Pediatric Dentistry and Orthodontics, School of Dentistry, Federal University of Rio de Janeiro, Rua. Prof. Rodolpho Paulo Rocco, 325 – Cidade Universitária da Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, 21941-617, Brazil – sequence: 4 givenname: Daniele Ferreira surname: Masterson fullname: Masterson, Daniele Ferreira email: danimasterson@yahoo.com.br organization: Central Library of the Health Science Center, Federal University of Rio de Janeiro, Brazil Avenida Carlos Chagas Filho, Bl L, 373 – Cidade Universitária da Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, 21941-90, Brazil – sequence: 5 givenname: Daniel orcidid: 0000-0002-7421-9510 surname: Adesse fullname: Adesse, Daniel email: adesse@ioc.fiocruz.br organization: Laboratory of Structural Biology, Instituto Oswaldo Cruz, Fiocruz, Av. Brasil, 4365 - Manguinhos, Rio de Janeiro, RJ, 21040-900, Brazil – sequence: 6 givenname: Lucianne Cople surname: Maia fullname: Maia, Lucianne Cople email: rorefa@terra.com.br organization: Department of Pediatric Dentistry and Orthodontics, School of Dentistry, Federal University of Rio de Janeiro, Rua. Prof. Rodolpho Paulo Rocco, 325 – Cidade Universitária da Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, 21941-617, Brazil – sequence: 7 givenname: Ana Maria surname: Bolognese fullname: Bolognese, Ana Maria email: anabolognes@yahoo.com.br organization: Department of Pediatric Dentistry and Orthodontics, School of Dentistry, Federal University of Rio de Janeiro, Rua. Prof. Rodolpho Paulo Rocco, 325 – Cidade Universitária da Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, 21941-617, Brazil |
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| Keywords | Periodontal ligament Tissue array analysis Tooth movement techniques Gene expression Transcriptome |
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| Snippet | •Evidence on the global gene expression of periodontal cells under static loading is scarce.•The studies on the subject show great heterogeneity in the methods... To evaluate the evidence reporting gene expression array data of human in vitro cultured periodontal ligament cells (PDLCs) submitted to static mechanical... |
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| SubjectTerms | Cells, Cultured Gene expression Humans Periodontal Ligament Stress, Mechanical Tissue array analysis Tooth Movement Techniques Transcriptome |
| Title | Global gene expression profile of periodontal ligament cells submitted to mechanical loading: A systematic review |
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