Discriminative power of Campylobacter phenotypic and genotypic typing methods

The aim of this study was to compare different typing methods, individually and combined, for use in the monitoring of Campylobacter in food. Campylobacter jejuni (n=94) and Campylobacter coli (n=52) isolated from different broiler meat carcasses were characterized using multilocus sequence typing (...

Ausführliche Beschreibung

Gespeichert in:

Bibliographische Detailangaben
Veröffentlicht in:	Journal of microbiological methods Jg. 125; S. 33 - 39
Hauptverfasser:	Duarte, Alexandra, Seliwiorstow, Tomasz, Miller, William G., De Zutter, Lieven, Uyttendaele, Mieke, Dierick, Katelijne, Botteldoorn, Nadine
Format:	Journal Article
Sprache:	Englisch
Veröffentlicht:	Netherlands Elsevier B.V 01.06.2016
Schlagworte:	Animals antibiotic resistance Antimicrobial resistance Bacterial Typing Techniques - methods Bacterial Typing Techniques - standards Broiler meat Campylobacter coli Campylobacter coli - classification Campylobacter coli - genetics Campylobacter coli - isolation & purification Campylobacter jejuni Campylobacter jejuni - classification Campylobacter jejuni - genetics Campylobacter jejuni - isolation & purification chicken meat Drug Resistance, Multiple, Bacterial - genetics flaA-RFLP flagellin Flagellin - genetics Food Food Microbiology - methods genes Genotyping Techniques - methods Genotyping Techniques - standards lipooligosaccharides Lipopolysaccharides - classification Meat - microbiology meat carcasses MLST monitoring multilocus sequence typing Multilocus Sequence Typing - methods Phenotype Polymorphism, Restriction Fragment Length Poultry - microbiology restriction fragment length polymorphism Typing methods virulence Virulence Factors - genetics Typing methods MLST flaA-RFLP Campylobacter coli Antimicrobial resistance Broiler meat Campylobacter jejuni Food
ISSN:	0167-7012, 1872-8359
Online-Zugang:	Volltext
Tags:	Tag hinzufügen Keine Tags, Fügen Sie den ersten Tag hinzu!

Abstract	The aim of this study was to compare different typing methods, individually and combined, for use in the monitoring of Campylobacter in food. Campylobacter jejuni (n=94) and Campylobacter coli (n=52) isolated from different broiler meat carcasses were characterized using multilocus sequence typing (MLST), flagellin gene A restriction fragment length polymorphism typing (flaA-RFLP), antimicrobial resistance profiling (AMRp), the presence/absence of 5 putative virulence genes; and, exclusively for C. jejuni, the determination of lipooligosaccharide (LOS) class. Discriminatory power was calculated by the Simpson's index of diversity (SID) and the congruence was measured by the adjusted Rand index and adjusted Wallace coefficient. MLST was individually the most discriminative typing method for both C. jejuni (SID=0.981) and C. coli (SID=0.957). The most discriminative combination with a SID of 0.992 for both C. jejuni and C. coli was obtained by combining MLST with flaA-RFLP. The combination of MLST with flaA-RFLP is an easy and feasible typing method for short-term monitoring of Campylobacter in broiler meat carcass. •MLST/flaA-RFLP combination had the highest typing discrimination in this study.•Discriminatory power of combined methods relies on congruence between methods.•MLST/flaA-RFLP is feasible for short-term monitoring of broiler meat for Campylobacter.•MLST/flaA-RFLP and MLST/AMRp provided equivalent discriminatory power.
AbstractList	The aim of this study was to compare different typing methods, individually and combined, for use in the monitoring of Campylobacter in food. Campylobacter jejuni (n=94) and Campylobacter coli (n=52) isolated from different broiler meat carcasses were characterized using multilocus sequence typing (MLST), flagellin gene A restriction fragment length polymorphism typing (flaA-RFLP), antimicrobial resistance profiling (AMRp), the presence/absence of 5 putative virulence genes; and, exclusively for C. jejuni, the determination of lipooligosaccharide (LOS) class. Discriminatory power was calculated by the Simpson's index of diversity (SID) and the congruence was measured by the adjusted Rand index and adjusted Wallace coefficient. MLST was individually the most discriminative typing method for both C. jejuni (SID=0.981) and C. coli (SID=0.957). The most discriminative combination with a SID of 0.992 for both C. jejuni and C. coli was obtained by combining MLST with flaA-RFLP. The combination of MLST with flaA-RFLP is an easy and feasible typing method for short-term monitoring of Campylobacter in broiler meat carcass. •MLST/flaA-RFLP combination had the highest typing discrimination in this study.•Discriminatory power of combined methods relies on congruence between methods.•MLST/flaA-RFLP is feasible for short-term monitoring of broiler meat for Campylobacter.•MLST/flaA-RFLP and MLST/AMRp provided equivalent discriminatory power. The aim of this study was to compare different typing methods, individually and combined, for use in the monitoring of Campylobacter in food. Campylobacter jejuni (n=94) and Campylobacter coli (n=52) isolated from different broiler meat carcasses were characterized using multilocus sequence typing (MLST), flagellin gene A restriction fragment length polymorphism typing (flaA-RFLP), antimicrobial resistance profiling (AMRp), the presence/absence of 5 putative virulence genes; and, exclusively for C. jejuni, the determination of lipooligosaccharide (LOS) class. Discriminatory power was calculated by the Simpson's index of diversity (SID) and the congruence was measured by the adjusted Rand index and adjusted Wallace coefficient. MLST was individually the most discriminative typing method for both C. jejuni (SID=0.981) and C. coli (SID=0.957). The most discriminative combination with a SID of 0.992 for both C. jejuni and C. coli was obtained by combining MLST with flaA-RFLP. The combination of MLST with flaA-RFLP is an easy and feasible typing method for short-term monitoring of Campylobacter in broiler meat carcass.
Author	Dierick, Katelijne Duarte, Alexandra Seliwiorstow, Tomasz Uyttendaele, Mieke Botteldoorn, Nadine De Zutter, Lieven Miller, William G.
Author_xml	– sequence: 1 givenname: Alexandra orcidid: 0000-0002-6189-3151 surname: Duarte fullname: Duarte, Alexandra organization: Laboratory of Food Microbiology and Food Preservation, Dept. Food Safety & Food Quality Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, B-9000 Gent, Belgium – sequence: 2 givenname: Tomasz surname: Seliwiorstow fullname: Seliwiorstow, Tomasz organization: Laboratory of Food Microbiology and Food Preservation, Dept. Food Safety & Food Quality Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, B-9000 Gent, Belgium – sequence: 3 givenname: William G. surname: Miller fullname: Miller, William G. organization: USDA, ARS, WRRC, Produce Safety and Microbiology, 800 Buchanan Street, Alabany, CA, 94710, USA – sequence: 4 givenname: Lieven surname: De Zutter fullname: De Zutter, Lieven organization: Dept. Veterinary Public Health & Food Safety, Faculty of Veterinary Medicine, Ghent University, Salisburylaan 133, 9820 Merelbeke, Belgium – sequence: 5 givenname: Mieke surname: Uyttendaele fullname: Uyttendaele, Mieke organization: Laboratory of Food Microbiology and Food Preservation, Dept. Food Safety & Food Quality Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, B-9000 Gent, Belgium – sequence: 6 givenname: Katelijne surname: Dierick fullname: Dierick, Katelijne organization: Institute of Public Health, Scientific service Food-borne pathogens, Juliette Wytsman Street 14, 1050 Brussels, Belgium – sequence: 7 givenname: Nadine surname: Botteldoorn fullname: Botteldoorn, Nadine organization: Institute of Public Health, Scientific service Food-borne pathogens, Juliette Wytsman Street 14, 1050 Brussels, Belgium
BackLink	https://www.ncbi.nlm.nih.gov/pubmed/26996762$$D View this record in MEDLINE/PubMed
BookMark	eNqNkU9v1DAQxS1URLeFT4CEcuSSMLbj2D5wQMtfqYgLnC3HmbReJXGwva322-NlWw4cChdbM_690fi9C3K2hAUJeUmhoUC7N7tm9jPmhpWiAd4AtE_IhirJasWFPiOb8iBrCZSdk4uUdgBU8FY9I-es07qTHduQr-99ctHPfrHZ32K1hjuMVRirrZ3XwxR663JprDe4hHxYvavsMlTXf6rjuVxXZY-bMKTn5Olop4Qv7u9L8uPjh-_bz_XVt09ftu-uatdqmuveuZ72EkGpVlnQCoQTnFnbCy2ksGyUdHSUt6A6J6UDjUwNZfUjqsaRX5LXp7lrDD_3mLKZyzdwmuyCYZ8MAwDOFevoP1EqNehOdAr-A1WylYIqXtBX9-i-n3Ewa7HQxoN5MLYA-gS4GFKKOBrnc7E4LDlaPxkK5hii2ZnfIZpjiAa4KSEWLf9L-zD-cdXbkwqL8bceo0nO4-Jw8BFdNkPwj-p_AZDptgA
CitedBy_id	crossref_primary_10_1089_fpd_2024_0008 crossref_primary_10_3390_ijms21083001 crossref_primary_10_3382_ps_pew487 crossref_primary_10_3389_fmicb_2018_00408 crossref_primary_10_1371_journal_pone_0311769 crossref_primary_10_1089_fpd_2017_2325 crossref_primary_10_3390_ani14091291 crossref_primary_10_1007_s00284_023_03517_4 crossref_primary_10_1016_j_ijfoodmicro_2020_108656 crossref_primary_10_1038_s41598_018_20135_4 crossref_primary_10_1016_j_mimet_2022_106662 crossref_primary_10_1038_s41598_019_45380_z crossref_primary_10_3389_fmicb_2021_622275 crossref_primary_10_1111_jam_14132 crossref_primary_10_3389_fmicb_2018_02201 crossref_primary_10_1016_j_ijfoodmicro_2018_04_004 crossref_primary_10_3389_fmicb_2018_01676 crossref_primary_10_1016_j_ijfoodmicro_2023_110137
Cites_doi	10.1172/JCI200415707 10.1128/JCM.01012-06 10.1186/1471-2180-10-200 10.1128/AEM.02215-09 10.1128/jcm.35.11.2810-2814.1997 10.1128/JCM.39.1.14-23.2001 10.3855/jidc.4958 10.1016/j.ijantimicag.2014.06.012 10.1128/JCM.42.2.792-799.2004 10.1515/znc-1997-3-419 10.1128/JCM.00669-11 10.1111/j.1863-2378.2010.01373.x 10.1128/AEM.00168-09 10.1111/j.1469-0691.2007.01786.x 10.1128/JB.00254-08 10.1007/s10096-012-1556-3 10.1128/IAI.06270-11 10.1128/jcm.31.6.1531-1536.1993 10.2807/ese.18.04.20380-en 10.1089/fpd.2009.0468 10.3201/eid1410.071109 10.1111/j.1574-695X.2007.00369.x 10.1128/JCM.02536-05 10.1128/JCM.00815-14 10.1128/JCM.41.5.1843-1849.2003 10.1128/jcm.26.11.2465-2466.1988 10.1046/j.1365-2672.2003.02101.x 10.1128/JCM.00042-08 10.1016/j.ijmm.2013.01.005 10.1128/JCM.01086-12 10.1007/s10096-015-2393-y 10.1128/IAI.00321-08 10.1016/j.mimet.2010.11.016 10.1128/jcm.35.3.759-763.1997 10.1128/JCM.37.3.510-517.1999 10.1155/2013/340605 10.1016/j.meegid.2010.07.023 10.1016/j.mimet.2013.03.008 10.1038/nrmicro1718 10.1111/j.1472-765X.2006.01987.x 10.1016/j.micinf.2009.07.004 10.1128/AEM.00865-08 10.1128/AEM.02269-08 10.7883/yoken.JJID.2007.1 10.1016/j.ijfoodmicro.2015.02.013 10.1371/journal.pone.0081796 10.1128/AEM.66.1.1-9.2000 10.1016/j.meegid.2012.12.010 10.1016/j.ijfoodmicro.2010.12.027 10.1128/JCM.43.5.2315-2329.2005 10.1128/JCM.41.9.4058-4067.2003
ContentType	Journal Article
Copyright	2016 Elsevier B.V. Copyright © 2016 Elsevier B.V. All rights reserved.
Copyright_xml	– notice: 2016 Elsevier B.V. – notice: Copyright © 2016 Elsevier B.V. All rights reserved.
DBID	AAYXX CITATION CGR CUY CVF ECM EIF NPM 7U8 7X8 C1K JXQ 7QL 7T7 8FD FR3 P64 7S9 L.6
DOI	10.1016/j.mimet.2016.03.004
DatabaseName	CrossRef Medline MEDLINE MEDLINE (Ovid) MEDLINE MEDLINE PubMed TOXLINE MEDLINE - Academic Environmental Sciences and Pollution Management Toxline Bacteriology Abstracts (Microbiology B) Industrial and Applied Microbiology Abstracts (Microbiology A) Technology Research Database Engineering Research Database Biotechnology and BioEngineering Abstracts AGRICOLA AGRICOLA - Academic
DatabaseTitle	CrossRef MEDLINE Medline Complete MEDLINE with Full Text PubMed MEDLINE (Ovid) TOXLINE MEDLINE - Academic Environmental Sciences and Pollution Management Engineering Research Database Technology Research Database Industrial and Applied Microbiology Abstracts (Microbiology A) Bacteriology Abstracts (Microbiology B) Biotechnology and BioEngineering Abstracts AGRICOLA AGRICOLA - Academic
DatabaseTitleList	AGRICOLA TOXLINE MEDLINE Engineering Research Database
Database_xml	– sequence: 1 dbid: NPM name: PubMed url: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed sourceTypes: Index Database – sequence: 2 dbid: 7X8 name: MEDLINE - Academic url: https://search.proquest.com/medline sourceTypes: Aggregation Database
DeliveryMethod	fulltext_linktorsrc
Discipline	Biology
EISSN	1872-8359
EndPage	39
ExternalDocumentID	26996762 10_1016_j_mimet_2016_03_004 S0167701216300380
Genre	Journal Article Comparative Study
GroupedDBID	--- --K --M -~X .1- .~1 0R~ 1B1 1P~ 1RT 1~. 1~5 29L 3O- 4.4 457 4G. 53G 5GY 5VS 7-5 71M 8P~ 9JM AAAJQ AABNK AACTN AAEDT AAEDW AAIAV AAIKJ AAKOC AALRI AAOAW AAQFI AAQXK AARKO AAXUO ABFNM ABFRF ABGSF ABJNI ABMAC ABUDA ABXDB ABYKQ ACDAQ ACGFO ACGFS ACIUM ACRLP ADBBV ADEZE ADMUD ADUVX AEBSH AEFWE AEHWI AEKER AENEX AFCTW AFKWA AFTJW AFXIZ AGEKW AGHFR AGRDE AGUBO AGYEJ AHHHB AIEXJ AIKHN AITUG AJBFU AJOXV AJUYK ALMA_UNASSIGNED_HOLDINGS AMFUW AMRAJ ASPBG AVWKF AXJTR AZFZN BKOJK BLXMC CJTIS CNWQP CS3 DOVZS DU5 EBS EFJIC EFLBG EJD EO8 EO9 EP2 EP3 F5P FDB FEDTE FGOYB FIRID FNPLU FYGXN G-2 G-Q G8K GBLVA HMG HVGLF HZ~ IHE J1W KOM LUGTX M41 MO0 N9A O-L O9- OAUVE OZT P-8 P-9 P2P PC. Q38 R2- RIG ROL RPZ SCC SDF SDG SDP SES SEW SIN SPCBC SSI SSU SSZ T5K WH7 WUQ Y6R Z5R ~02 ~G- ~KM 9DU AAHBH AATTM AAXKI AAYWO AAYXX ABDPE ABWVN ACLOT ACRPL ACVFH ADCNI ADNMO AEIPS AEUPX AFJKZ AFPUW AGQPQ AIGII AIIUN AKBMS AKRWK AKYEP ANKPU APXCP CITATION EFKBS ~HD CGR CUY CVF ECM EIF NPM 7U8 7X8 C1K JXQ 7QL 7T7 8FD FR3 P64 7S9 L.6
ID	FETCH-LOGICAL-c491t-bccb1b7e08848a09805c532aab59575a2f71fc134086c77c09e28d34809808ff3
ISICitedReferencesCount	23
ISICitedReferencesURI	http://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=Summon&SrcAuth=ProQuest&DestLinkType=CitingArticles&DestApp=WOS_CPL&KeyUT=000376702200006&url=https%3A%2F%2Fcvtisr.summon.serialssolutions.com%2F%23%21%2Fsearch%3Fho%3Df%26include.ft.matches%3Dt%26l%3Dnull%26q%3D
ISSN	0167-7012
IngestDate	Sun Sep 28 10:03:08 EDT 2025 Tue Oct 07 09:47:00 EDT 2025 Thu Oct 02 05:57:01 EDT 2025 Wed Feb 19 01:55:47 EST 2025 Sat Nov 29 07:28:12 EST 2025 Tue Nov 18 22:11:55 EST 2025 Fri Feb 23 02:22:56 EST 2024
IsPeerReviewed	true
IsScholarly	true
Keywords	Typing methods MLST flaA-RFLP Campylobacter coli Antimicrobial resistance Broiler meat Campylobacter jejuni Food
Language	English
License	Copyright © 2016 Elsevier B.V. All rights reserved.
LinkModel	OpenURL
MergedId	FETCHMERGED-LOGICAL-c491t-bccb1b7e08848a09805c532aab59575a2f71fc134086c77c09e28d34809808ff3
Notes	ObjectType-Article-2 SourceType-Scholarly Journals-1 ObjectType-Feature-1 content type line 23 ObjectType-Article-1 ObjectType-Feature-2
ORCID	0000-0002-6189-3151
PMID	26996762
PQID	1787475183
PQPubID	23479
PageCount	7
ParticipantIDs	proquest_miscellaneous_2000338261 proquest_miscellaneous_1790965680 proquest_miscellaneous_1787475183 pubmed_primary_26996762 crossref_citationtrail_10_1016_j_mimet_2016_03_004 crossref_primary_10_1016_j_mimet_2016_03_004 elsevier_sciencedirect_doi_10_1016_j_mimet_2016_03_004
PublicationCentury	2000
PublicationDate	June 2016 2016-06-00 2016-Jun 20160601
PublicationDateYYYYMMDD	2016-06-01
PublicationDate_xml	– month: 06 year: 2016 text: June 2016
PublicationDecade	2010
PublicationPlace	Netherlands
PublicationPlace_xml	– name: Netherlands
PublicationTitle	Journal of microbiological methods
PublicationTitleAlternate	J Microbiol Methods
PublicationYear	2016
Publisher	Elsevier B.V
Publisher_xml	– name: Elsevier B.V
References	Sails, Swaminathan, Fields (bb0245) 2003; 41 Habib, Miller, Uyttendaele, Houf, De (bb0130) 2009; 75 Young, Davis, DiRita (bb0280) 2007; 5 Djordjevic, Unicomb, Adamson, Mickan, Rios (bb0060) 2007; 45 Harrington, Moran, Ridley, Newell, Madden (bb0140) 2003; 95 EFSA and ECDC (bb0080) 2015; 13 EFSA (bb0070) 2013; 11 Goering (bb0110) 2010; 10 de Haan, Kivisto, Hakkinen, Corander, Hanninen (bb0050) 2010; 10 Cody, McCarthy, Wimalarathna, Colles, Clark, Bowler, Maiden, Dingle (bb0020) 2012; 50 Louwen, Heikema, van B, Ott, Gilbert, Ang, Endtz, Bergman, Nieuwenhuis (bb0175) 2008; 76 European Comission (bb0090) 1999 Louwen, Nieuwenhuis, van M, Horst-Kreft, de R, Heikema, van Wamel, Wagenaar, Endtz, Samsom, van B, Akhmanova, van B (bb0180) 2012; 80 Richards, Lefebure, Pavinski Bitar, Stanhope (bb0235) 2013; 14 Konkel, Gray, Kim, Garvis, Yoon (bb0160) 1999; 37 Cornelius, Gilpin, Carter, Nicol, On (bb0030) 2010; 76 Smith, Coker, Olukoya (bb0255) 1997; 52 Revez, Hanninen (bb0230) 2012; 31 Carriço, Silva-Costa, Melo-Cristino, Pinto, de Lencastre, Almeida, Ramirez (bb0015) 2006; 44 Senok, Yousif, Mazi, Sharaf, Bindayna, Elnima, Botta (bb0250) 2007; 60 Behringer, Miller, Oyarzabal (bb0010) 2011; 84 Hardy, Lackey, Cannon, Price, Silbergeld (bb0135) 2011; 145 Meinersmann, Helsel, Fields, Hiett (bb0185) 1997; 35 Van Belkum, Tassios, Dijkshoorn, Haeggman, Cookson, Fry, Fussing, Green, Feil, Gerner-Smidt, Brisse, Struelens (bb0265) 2007; 13 Godschalk, Heikema, Gilbert, Komagamine, Ang, Glerum, Brochu, Li, Yuki, Jacobs, van Belkum, Endtz (bb0105) 2004; 114 Cornelius, Vandenberg, Robson, Gilpin, Brandt, Scholes, Martiny, Carter, van Vught, Schouten, On (bb0035) 2014; 52 European Union (bb0100) 2003; 268 Corcoran, Quinn, Cotter, Whyte, Fanning (bb0025) 2006; 43 Habib, Louwen, Uyttendaele, Houf, Vandenberg, Nieuwenhuis, Miller, van B, De Z (bb0125) 2009; 75 Nachamkin, Bohachick, Patton (bb0205) 1993; 31 Dingle, McCarthy, Cody, Peto, Maiden (bb0055) 2008; 14 Moffatt, Cameron, Mickan, Givney (bb0195) 2010; 7 Miller, On, Wang, Fontanoz, Lastovica, Mandrell (bb0190) 2005; 43 European Union (bb0095) 2003; 325 EFSA (bb0075) 2015; 13 Hunter, Gaston (bb0145) 1988; 26 Guyard-Nicodeme, Rivoal, Houard, Rose, Quesne, Mourand, Rouxel, Kempf, Guillier, Gauchard, Chemaly (bb0120) 2015; 203 Ragimbeau, Schneider, Losch, Even, Mossong (bb0225) 2008; 74 Sabat, Budimir, Nashev, Sa-Leao, van D, Laurent, Grundmann, Friedrich A (bb0240) 2013; 18 Dan, Tabaran, Mihaiu, Mihaiu (bb0040) 2015; 9 Asakura, Samosornsuk, Hinenoya, Misawa, Nishimura, Matsuhisa, Yamasaki (bb0005) 2008; 52 Kittl, Heckel, Korczak, Kuhnert (bb0155) 2013; 8 Davis, Hancock, Besser, Call (bb0045) 2003; 41 Oporto, Juste, Lopez-Portoles, Hurtado (bb0210) 2011; 58 Dingle, Colles, Wareing, Ure, Fox, Bolton, Bootsma, Willems, Urwin, Maiden (bb9000) 2001; 39 Wieczorek, Osek (bb0275) 2013; 2013 Duarte, Santos, Manageiro, Martins, Fraqueza, Canica, Domingues, Oleastro (bb0065) 2014; 44 Ellström, Feodoroff, Hänninen, Rautelin (bb0085) 2013; 303 Koreen, Ramaswamy, Graviss, Naidich, Musser, Kreiswirth (bb0165) 2004; 42 Wassenaar, Newell (bb0270) 2000; 66 Parker, Gilbert, Yuki, Endtz, Mandrell (bb0220) 2008; 190 Gonzalez, Grant, Richardson, Park, Collins (bb0115) 1997; 35 Oyarzabal, Williams, Zhou, Samadpour (bb0215) 2013; 95 Levesque, Frost, Arbeit, Michaud (bb0170) 2008; 46 Iraola, Betancor, Calleros, Gadea, Algorta, Galeano, Muxi, Greif, Perez (bb0150) 2015 Taboada, Ross, Mutschall, Mackinnon, Roberts, Buchanan, Kruczkiewicz, Jokinen, Thomas, Nash, Gannon, Marshall, Pollari, Clark (bb0260) 2012; 50 Mortensen, Kuijf, Ang, Schiellerup, Krogfelt, Jacobs, Van Belkum, Endtz, Bergman (bb0200) 2009; 11 EFSA (10.1016/j.mimet.2016.03.004_bb0070) 2013; 11 Levesque (10.1016/j.mimet.2016.03.004_bb0170) 2008; 46 Behringer (10.1016/j.mimet.2016.03.004_bb0010) 2011; 84 Taboada (10.1016/j.mimet.2016.03.004_bb0260) 2012; 50 Guyard-Nicodeme (10.1016/j.mimet.2016.03.004_bb0120) 2015; 203 Godschalk (10.1016/j.mimet.2016.03.004_bb0105) 2004; 114 Richards (10.1016/j.mimet.2016.03.004_bb0235) 2013; 14 Dan (10.1016/j.mimet.2016.03.004_bb0040) 2015; 9 Dingle (10.1016/j.mimet.2016.03.004_bb9000) 2001; 39 Parker (10.1016/j.mimet.2016.03.004_bb0220) 2008; 190 Van Belkum (10.1016/j.mimet.2016.03.004_bb0265) 2007; 13 Cornelius (10.1016/j.mimet.2016.03.004_bb0035) 2014; 52 de Haan (10.1016/j.mimet.2016.03.004_bb0050) 2010; 10 Louwen (10.1016/j.mimet.2016.03.004_bb0180) 2012; 80 Hunter (10.1016/j.mimet.2016.03.004_bb0145) 1988; 26 Moffatt (10.1016/j.mimet.2016.03.004_bb0195) 2010; 7 Oyarzabal (10.1016/j.mimet.2016.03.004_bb0215) 2013; 95 European Union (10.1016/j.mimet.2016.03.004_bb0100) 2003; 268 Louwen (10.1016/j.mimet.2016.03.004_bb0175) 2008; 76 Habib (10.1016/j.mimet.2016.03.004_bb0125) 2009; 75 Ellström (10.1016/j.mimet.2016.03.004_bb0085) 2013; 303 Iraola (10.1016/j.mimet.2016.03.004_bb0150) 2015 Revez (10.1016/j.mimet.2016.03.004_bb0230) 2012; 31 Young (10.1016/j.mimet.2016.03.004_bb0280) 2007; 5 Mortensen (10.1016/j.mimet.2016.03.004_bb0200) 2009; 11 Cody (10.1016/j.mimet.2016.03.004_bb0020) 2012; 50 Gonzalez (10.1016/j.mimet.2016.03.004_bb0115) 1997; 35 Corcoran (10.1016/j.mimet.2016.03.004_bb0025) 2006; 43 Smith (10.1016/j.mimet.2016.03.004_bb0255) 1997; 52 Kittl (10.1016/j.mimet.2016.03.004_bb0155) 2013; 8 Meinersmann (10.1016/j.mimet.2016.03.004_bb0185) 1997; 35 Dingle (10.1016/j.mimet.2016.03.004_bb0055) 2008; 14 Koreen (10.1016/j.mimet.2016.03.004_bb0165) 2004; 42 Nachamkin (10.1016/j.mimet.2016.03.004_bb0205) 1993; 31 Duarte (10.1016/j.mimet.2016.03.004_bb0065) 2014; 44 EFSA and ECDC (10.1016/j.mimet.2016.03.004_bb0080) 2015; 13 Habib (10.1016/j.mimet.2016.03.004_bb0130) 2009; 75 Djordjevic (10.1016/j.mimet.2016.03.004_bb0060) 2007; 45 Goering (10.1016/j.mimet.2016.03.004_bb0110) 2010; 10 Asakura (10.1016/j.mimet.2016.03.004_bb0005) 2008; 52 EFSA (10.1016/j.mimet.2016.03.004_bb0075) 2015; 13 Sails (10.1016/j.mimet.2016.03.004_bb0245) 2003; 41 Cornelius (10.1016/j.mimet.2016.03.004_bb0030) 2010; 76 Davis (10.1016/j.mimet.2016.03.004_bb0045) 2003; 41 Carriço (10.1016/j.mimet.2016.03.004_bb0015) 2006; 44 Hardy (10.1016/j.mimet.2016.03.004_bb0135) 2011; 145 Wieczorek (10.1016/j.mimet.2016.03.004_bb0275) 2013; 2013 European Union (10.1016/j.mimet.2016.03.004_bb0095) 2003; 325 Senok (10.1016/j.mimet.2016.03.004_bb0250) 2007; 60 European Comission (10.1016/j.mimet.2016.03.004_bb0090) 1999 Wassenaar (10.1016/j.mimet.2016.03.004_bb0270) 2000; 66 Konkel (10.1016/j.mimet.2016.03.004_bb0160) 1999; 37 Miller (10.1016/j.mimet.2016.03.004_bb0190) 2005; 43 Ragimbeau (10.1016/j.mimet.2016.03.004_bb0225) 2008; 74 Oporto (10.1016/j.mimet.2016.03.004_bb0210) 2011; 58 Harrington (10.1016/j.mimet.2016.03.004_bb0140) 2003; 95 Sabat (10.1016/j.mimet.2016.03.004_bb0240) 2013; 18
References_xml	– volume: 74 start-page: 7715 year: 2008 end-page: 7722 ident: bb0225 article-title: Multilocus sequence typing, pulsed-field gel electrophoresis, and publication-title: Appl. Environ. Microbiol. – volume: 31 start-page: 1531 year: 1993 end-page: 1536 ident: bb0205 article-title: Flagellin gene typing of publication-title: J. Clin. Microbiol. – volume: 37 start-page: 510 year: 1999 end-page: 517 ident: bb0160 article-title: Identification of the enteropathogens publication-title: J. Clin. Microbiol. – volume: 76 start-page: 4431 year: 2008 end-page: 4438 ident: bb0175 article-title: The sialylated lipooligosaccharide outer core in publication-title: Infect. Immun. – volume: 11 start-page: 988 year: 2009 end-page: 994 ident: bb0200 article-title: Sialylation of publication-title: Microbes Infect. – year: 2015 ident: bb0150 article-title: A rural worker infected with a bovine-prevalent genotype of publication-title: Eur. J. Clin. Microbiol. Infect. Dis. – volume: 75 start-page: 4277 year: 2009 end-page: 4288 ident: bb0125 article-title: Correlation between genotypic diversity, lipooligosaccharide gene locus class variation, and caco-2 cell invasion potential of publication-title: Appl. Environ. Microbiol. – volume: 50 start-page: 788 year: 2012 end-page: 797 ident: bb0260 article-title: Development and validation of a comparative genomic fingerprinting method for high-resolution genotyping of publication-title: J. Clin. Microbiol. – volume: 18 start-page: 20380 year: 2013 ident: bb0240 article-title: Overview of molecular typing methods for outbreak detection and epidemiological surveillance publication-title: Euro Surveill. – volume: 303 start-page: 134 year: 2013 end-page: 139 ident: bb0085 article-title: Characterization of clinical publication-title: Int. J. Med. Microbiol. – volume: 7 start-page: 1285 year: 2010 end-page: 1290 ident: bb0195 article-title: gastroenteritis at an Australian boarding school: consistency between epidemiology, publication-title: Foodborne Pathog. Dis. – volume: 2013 year: 2013 ident: bb0275 article-title: Antimicrobial resistance mechanisms among publication-title: BioMed Res. Int. – volume: 52 start-page: 260 year: 2008 end-page: 266 ident: bb0005 article-title: Development of a cytolethal distending toxin (cdt) gene-based species-specific multiplex PCR assay for the detection and identification of publication-title: FEMS Immunol. Med. Microbiol. – volume: 5 start-page: 665 year: 2007 end-page: 679 ident: bb0280 article-title: : molecular biology and pathogenesis publication-title: Nat. Rev. Microbiol. – volume: 145 start-page: 395 year: 2011 end-page: 399 ident: bb0135 article-title: Prevalence of potentially neuropathic publication-title: Int. J. Food Microbiol. – volume: 14 start-page: 200 year: 2013 end-page: 213 ident: bb0235 article-title: Comparative characterization of the virulence gene clusters (lipooligosaccharide [LOS] and capsular polysaccharide [CPS]) for publication-title: Infect. Genet. Evol. – volume: 325 start-page: 40 year: 2003 ident: bb0095 article-title: Directive 2003/99/EC on the monitoring of zoonoses and zoonotic agents publication-title: Off. J. Eur. Union L – volume: 95 start-page: 76 year: 2013 end-page: 83 ident: bb0215 article-title: Improved protocol for isolation of publication-title: J. Microbiol. Methods – volume: 11 start-page: 3502 year: 2013 end-page: 3590 ident: bb0070 article-title: Scientific opinion on the evaluation of molecular typing methods for major food-borne microbiological hazards and their use for attribution modelling, outbreak investigation and scanning surveillance: Part 1 (evaluation of methods and applications)1 publication-title: EFSA J. – volume: 203 start-page: 8 year: 2015 end-page: 14 ident: bb0120 article-title: Prevalence and characterization of publication-title: Int. J. Food Microbiol. – volume: 58 start-page: 365 year: 2011 end-page: 375 ident: bb0210 article-title: Genetic diversity among publication-title: Zoonoses Public Health – volume: 13 start-page: 1 year: 2007 end-page: 46 ident: bb0265 article-title: Guidelines for the validation and application of typing methods for use in bacterial epidemiology publication-title: Clin. Microbiol. Infect. – year: 1999 ident: bb0090 article-title: Opinion of the Scientific Steering Committee on Antimicrobial Resistance – volume: 114 start-page: 1659 year: 2004 end-page: 1665 ident: bb0105 article-title: The crucial role of publication-title: J. Clin. Invest. – volume: 9 start-page: 35 year: 2015 end-page: 41 ident: bb0040 article-title: Antibiotic susceptibility and prevalence of foodborne pathogens in poultry meat in Romania publication-title: J. Infect. Dev. Ctries. – volume: 39 start-page: 14 year: 2001 end-page: 23 ident: bb9000 article-title: Multilocus sequence typing system for publication-title: J. Clin. Microbiol. – volume: 80 start-page: 3307 year: 2012 end-page: 3318 ident: bb0180 article-title: translocation across intestinal epithelial cells is facilitated by ganglioside-like lipooligosaccharide structures publication-title: Infect. Immun. – volume: 13 start-page: 4329 year: 2015 end-page: 4520 ident: bb0075 article-title: The European Union summary report on trends and sources of zoonoses, zoonotic agents and food-borne outbreaks in 2014 publication-title: EFSA J. – volume: 13 start-page: 4036 year: 2015 end-page: 4214 ident: bb0080 article-title: The European Union summary report on antimicrobial resistance in zoonotic and indicator bacteria from humans, animals and food in 2013 publication-title: EFSA J. – volume: 10 start-page: 200 year: 2010 ident: bb0050 article-title: Multilocus sequence types of Finnish bovine publication-title: BMC Microbiol. – volume: 43 start-page: 2315 year: 2005 end-page: 2329 ident: bb0190 article-title: Extended multilocus sequence typing system for publication-title: J. Clin. Microbiol. – volume: 268 start-page: 29 year: 2003 end-page: 43 ident: bb0100 article-title: Regulation (EC) No 1831/2003 on additives for use in animal nutrition publication-title: Off. J. Eur. Union L – volume: 41 start-page: 4058 year: 2003 end-page: 4067 ident: bb0245 article-title: Clonal complexes of publication-title: J. Clin. Microbiol. – volume: 52 start-page: 259 year: 1997 end-page: 263 ident: bb0255 article-title: Biotyping of publication-title: Z. Naturforsch. C – volume: 46 start-page: 3404 year: 2008 end-page: 3411 ident: bb0170 article-title: Multilocus sequence typing of publication-title: J. Clin. Microbiol. – volume: 60 start-page: 1 year: 2007 end-page: 4 ident: bb0250 article-title: Pattern of antibiotic susceptibility in publication-title: Jpn. J. Infect. Dis. – volume: 84 start-page: 194 year: 2011 end-page: 201 ident: bb0010 article-title: Typing of publication-title: J. Microbiol. Methods – volume: 76 start-page: 1533 year: 2010 end-page: 1544 ident: bb0030 article-title: Comparison of PCR binary typing (P-BIT), a new approach to epidemiological subtyping of publication-title: Appl. Environ. Microbiol. – volume: 35 start-page: 759 year: 1997 end-page: 763 ident: bb0115 article-title: Specific identification of the enteropathogens publication-title: J. Clin. Microbiol. – volume: 35 start-page: 2810 year: 1997 end-page: 2814 ident: bb0185 article-title: Discrimination of publication-title: J. Clin. Microbiol. – volume: 42 start-page: 792 year: 2004 end-page: 799 ident: bb0165 article-title: spa typing method for discriminating among publication-title: J. Clin. Microbiol. – volume: 95 start-page: 1321 year: 2003 end-page: 1333 ident: bb0140 article-title: Inter-laboratory evaluation of three flagellin PCR/RFLP methods for typing publication-title: J. Appl. Microbiol. – volume: 10 start-page: 866 year: 2010 end-page: 875 ident: bb0110 article-title: Pulsed field gel electrophoresis: a review of application and interpretation in the molecular epidemiology of infectious disease publication-title: Infect. Genet. Evol. – volume: 44 start-page: 306 year: 2014 end-page: 313 ident: bb0065 article-title: Human, food and animal publication-title: Int. J. Antimicrob. Agents – volume: 52 start-page: 3345 year: 2014 end-page: 3350 ident: bb0035 article-title: Same-day subtyping of publication-title: J. Clin. Microbiol. – volume: 43 start-page: 560 year: 2006 end-page: 565 ident: bb0025 article-title: Antimicrobial resistance profiling and publication-title: Lett. Appl. Microbiol. – volume: 66 start-page: 1 year: 2000 end-page: 9 ident: bb0270 article-title: Genotyping of publication-title: Appl. Environ. Microbiol. – volume: 75 start-page: 4264 year: 2009 end-page: 4272 ident: bb0130 article-title: Clonal population structure and antimicrobial resistance of publication-title: Appl. Environ. Microbiol. – volume: 44 start-page: 2524 year: 2006 end-page: 2532 ident: bb0015 article-title: Illustration of a common framework for relating multiple typing methods by application to macrolide-resistant publication-title: J. Clin. Microbiol. – volume: 50 start-page: 3193 year: 2012 end-page: 3201 ident: bb0020 article-title: A longitudinal 6-year study of the molecular epidemiology of clinical publication-title: J. Clin. Microbiol. – volume: 31 start-page: 2203 year: 2012 end-page: 2209 ident: bb0230 article-title: Lipooligosaccharide locus classes are associated with certain publication-title: Eur. J. Clin. Microbiol. Infect. Dis. – volume: 190 start-page: 5681 year: 2008 end-page: 5689 ident: bb0220 article-title: Characterization of lipooligosaccharide-biosynthetic loci of publication-title: J. Bacteriol. – volume: 26 start-page: 2465 year: 1988 end-page: 2466 ident: bb0145 article-title: Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity publication-title: J. Clin. Microbiol. – volume: 41 start-page: 1843 year: 2003 end-page: 1849 ident: bb0045 article-title: Evaluation of pulsed-field gel electrophoresis as a tool for determining the degree of genetic relatedness between strains of publication-title: J. Clin. Microbiol. – volume: 8 start-page: e81796 year: 2013 ident: bb0155 article-title: Source attribution of human publication-title: PLoS One – volume: 45 start-page: 102 year: 2007 end-page: 108 ident: bb0060 article-title: Clonal complexes of publication-title: J. Clin. Microbiol. – volume: 14 start-page: 1620 year: 2008 end-page: 1622 ident: bb0055 article-title: Extended sequence typing of publication-title: Emerg. Infect. Dis. – volume: 114 start-page: 1659 issue: 11 year: 2004 ident: 10.1016/j.mimet.2016.03.004_bb0105 article-title: The crucial role of Campylobacter jejuni genes in anti-ganglioside antibody induction in Guillain–Barré syndrome publication-title: J. Clin. Invest. doi: 10.1172/JCI200415707 – volume: 45 start-page: 102 issue: 1 year: 2007 ident: 10.1016/j.mimet.2016.03.004_bb0060 article-title: Clonal complexes of Campylobacter jejuni identified by multilocus sequence typing are reliably predicted by restriction fragment length polymorphism analyses of the flaA gene publication-title: J. Clin. Microbiol. doi: 10.1128/JCM.01012-06 – volume: 10 start-page: 200 year: 2010 ident: 10.1016/j.mimet.2016.03.004_bb0050 article-title: Multilocus sequence types of Finnish bovine Campylobacter jejuni isolates and their attribution to human infections publication-title: BMC Microbiol. doi: 10.1186/1471-2180-10-200 – volume: 76 start-page: 1533 issue: 5 year: 2010 ident: 10.1016/j.mimet.2016.03.004_bb0030 article-title: Comparison of PCR binary typing (P-BIT), a new approach to epidemiological subtyping of Campylobacter jejuni, with serotyping, pulsed-field gel electrophoresis, and multilocus sequence typing methods publication-title: Appl. Environ. Microbiol. doi: 10.1128/AEM.02215-09 – volume: 35 start-page: 2810 issue: 11 year: 1997 ident: 10.1016/j.mimet.2016.03.004_bb0185 article-title: Discrimination of Campylobacter jejuni isolates by fla gene sequencing publication-title: J. Clin. Microbiol. doi: 10.1128/jcm.35.11.2810-2814.1997 – volume: 39 start-page: 14 issue: 1 year: 2001 ident: 10.1016/j.mimet.2016.03.004_bb9000 article-title: Multilocus sequence typing system for Campylobacter jejuni publication-title: J. Clin. Microbiol. doi: 10.1128/JCM.39.1.14-23.2001 – volume: 9 start-page: 35 issue: 1 year: 2015 ident: 10.1016/j.mimet.2016.03.004_bb0040 article-title: Antibiotic susceptibility and prevalence of foodborne pathogens in poultry meat in Romania publication-title: J. Infect. Dev. Ctries. doi: 10.3855/jidc.4958 – volume: 44 start-page: 306 issue: 4 year: 2014 ident: 10.1016/j.mimet.2016.03.004_bb0065 article-title: Human, food and animal Campylobacter spp. isolated in Portugal: high genetic diversity and antibiotic resistance rates publication-title: Int. J. Antimicrob. Agents doi: 10.1016/j.ijantimicag.2014.06.012 – volume: 42 start-page: 792 issue: 2 year: 2004 ident: 10.1016/j.mimet.2016.03.004_bb0165 article-title: spa typing method for discriminating among Staphylococcus aureus isolates: implications for use of a single marker to detect genetic micro- and macrovariation publication-title: J. Clin. Microbiol. doi: 10.1128/JCM.42.2.792-799.2004 – volume: 52 start-page: 259 issue: 3–4 year: 1997 ident: 10.1016/j.mimet.2016.03.004_bb0255 article-title: Biotyping of Campylobacter strains isolated in Lagos, Nigeria using the modified Preston biotype publication-title: Z. Naturforsch. C doi: 10.1515/znc-1997-3-419 – volume: 50 start-page: 788 issue: 3 year: 2012 ident: 10.1016/j.mimet.2016.03.004_bb0260 article-title: Development and validation of a comparative genomic fingerprinting method for high-resolution genotyping of Campylobacter jejuni publication-title: J. Clin. Microbiol. doi: 10.1128/JCM.00669-11 – volume: 58 start-page: 365 issue: 5 year: 2011 ident: 10.1016/j.mimet.2016.03.004_bb0210 article-title: Genetic diversity among Campylobacter jejuni isolates from healthy livestock and their links to human isolates in Spain publication-title: Zoonoses Public Health doi: 10.1111/j.1863-2378.2010.01373.x – volume: 75 start-page: 4264 issue: 13 year: 2009 ident: 10.1016/j.mimet.2016.03.004_bb0130 article-title: Clonal population structure and antimicrobial resistance of Campylobacter jejuni in chicken meat from Belgium publication-title: Appl. Environ. Microbiol. doi: 10.1128/AEM.00168-09 – volume: 13 start-page: 1 issue: Suppl. 3 year: 2007 ident: 10.1016/j.mimet.2016.03.004_bb0265 article-title: Guidelines for the validation and application of typing methods for use in bacterial epidemiology publication-title: Clin. Microbiol. Infect. doi: 10.1111/j.1469-0691.2007.01786.x – volume: 190 start-page: 5681 issue: 16 year: 2008 ident: 10.1016/j.mimet.2016.03.004_bb0220 article-title: Characterization of lipooligosaccharide-biosynthetic loci of Campylobacter jejuni reveals new lipooligosaccharide classes: evidence of mosaic organizations publication-title: J. Bacteriol. doi: 10.1128/JB.00254-08 – volume: 31 start-page: 2203 issue: 9 year: 2012 ident: 10.1016/j.mimet.2016.03.004_bb0230 article-title: Lipooligosaccharide locus classes are associated with certain Campylobacter jejuni multilocus sequence types publication-title: Eur. J. Clin. Microbiol. Infect. Dis. doi: 10.1007/s10096-012-1556-3 – volume: 80 start-page: 3307 issue: 9 year: 2012 ident: 10.1016/j.mimet.2016.03.004_bb0180 article-title: Campylobacter jejuni translocation across intestinal epithelial cells is facilitated by ganglioside-like lipooligosaccharide structures publication-title: Infect. Immun. doi: 10.1128/IAI.06270-11 – volume: 31 start-page: 1531 issue: 6 year: 1993 ident: 10.1016/j.mimet.2016.03.004_bb0205 article-title: Flagellin gene typing of Campylobacter jejuni by restriction fragment length polymorphism analysis publication-title: J. Clin. Microbiol. doi: 10.1128/jcm.31.6.1531-1536.1993 – volume: 18 start-page: 20380 issue: 4 year: 2013 ident: 10.1016/j.mimet.2016.03.004_bb0240 article-title: Overview of molecular typing methods for outbreak detection and epidemiological surveillance publication-title: Euro Surveill. doi: 10.2807/ese.18.04.20380-en – volume: 7 start-page: 1285 issue: 11 year: 2010 ident: 10.1016/j.mimet.2016.03.004_bb0195 article-title: Campylobacter jejuni gastroenteritis at an Australian boarding school: consistency between epidemiology, flaA typing, and multilocus sequence typing publication-title: Foodborne Pathog. Dis. doi: 10.1089/fpd.2009.0468 – volume: 14 start-page: 1620 issue: 10 year: 2008 ident: 10.1016/j.mimet.2016.03.004_bb0055 article-title: Extended sequence typing of Campylobacter spp., United Kingdom publication-title: Emerg. Infect. Dis. doi: 10.3201/eid1410.071109 – volume: 52 start-page: 260 issue: 2 year: 2008 ident: 10.1016/j.mimet.2016.03.004_bb0005 article-title: Development of a cytolethal distending toxin (cdt) gene-based species-specific multiplex PCR assay for the detection and identification of Campylobacter jejuni, Campylobacter coli and Campylobacter fetus publication-title: FEMS Immunol. Med. Microbiol. doi: 10.1111/j.1574-695X.2007.00369.x – volume: 44 start-page: 2524 issue: 7 year: 2006 ident: 10.1016/j.mimet.2016.03.004_bb0015 article-title: Illustration of a common framework for relating multiple typing methods by application to macrolide-resistant Streptococcus pyogenes publication-title: J. Clin. Microbiol. doi: 10.1128/JCM.02536-05 – volume: 52 start-page: 3345 issue: 9 year: 2014 ident: 10.1016/j.mimet.2016.03.004_bb0035 article-title: Same-day subtyping of Campylobacter jejuni and C. coli isolates by use of multiplex ligation-dependent probe amplification-binary typing publication-title: J. Clin. Microbiol. doi: 10.1128/JCM.00815-14 – volume: 41 start-page: 1843 issue: 5 year: 2003 ident: 10.1016/j.mimet.2016.03.004_bb0045 article-title: Evaluation of pulsed-field gel electrophoresis as a tool for determining the degree of genetic relatedness between strains of Escherichia coli O157:H7 publication-title: J. Clin. Microbiol. doi: 10.1128/JCM.41.5.1843-1849.2003 – volume: 325 start-page: 40 issue: 31 year: 2003 ident: 10.1016/j.mimet.2016.03.004_bb0095 article-title: Directive 2003/99/EC on the monitoring of zoonoses and zoonotic agents publication-title: Off. J. Eur. Union L – volume: 26 start-page: 2465 issue: 11 year: 1988 ident: 10.1016/j.mimet.2016.03.004_bb0145 article-title: Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity publication-title: J. Clin. Microbiol. doi: 10.1128/jcm.26.11.2465-2466.1988 – volume: 95 start-page: 1321 issue: 6 year: 2003 ident: 10.1016/j.mimet.2016.03.004_bb0140 article-title: Inter-laboratory evaluation of three flagellin PCR/RFLP methods for typing Campylobacter jejuni and C. coli: the CAMPYNET experience publication-title: J. Appl. Microbiol. doi: 10.1046/j.1365-2672.2003.02101.x – volume: 46 start-page: 3404 issue: 10 year: 2008 ident: 10.1016/j.mimet.2016.03.004_bb0170 article-title: Multilocus sequence typing of Campylobacter jejuni isolates from humans, chickens, raw milk, and environmental water in Quebec, Canada publication-title: J. Clin. Microbiol. doi: 10.1128/JCM.00042-08 – volume: 303 start-page: 134 issue: 3 year: 2013 ident: 10.1016/j.mimet.2016.03.004_bb0085 article-title: Characterization of clinical Campylobacter jejuni isolates with special emphasis on lipooligosaccharide locus class, putative virulence factors and host response publication-title: Int. J. Med. Microbiol. doi: 10.1016/j.ijmm.2013.01.005 – volume: 268 start-page: 29 year: 2003 ident: 10.1016/j.mimet.2016.03.004_bb0100 article-title: Regulation (EC) No 1831/2003 on additives for use in animal nutrition publication-title: Off. J. Eur. Union L – volume: 13 start-page: 4329 issue: 12 year: 2015 ident: 10.1016/j.mimet.2016.03.004_bb0075 article-title: The European Union summary report on trends and sources of zoonoses, zoonotic agents and food-borne outbreaks in 2014 publication-title: EFSA J. – volume: 50 start-page: 3193 issue: 10 year: 2012 ident: 10.1016/j.mimet.2016.03.004_bb0020 article-title: A longitudinal 6-year study of the molecular epidemiology of clinical Campylobacter isolates in Oxfordshire, United Kingdom publication-title: J. Clin. Microbiol. doi: 10.1128/JCM.01086-12 – year: 2015 ident: 10.1016/j.mimet.2016.03.004_bb0150 article-title: A rural worker infected with a bovine-prevalent genotype of Campylobacter fetus subsp. fetus supports zoonotic transmission and inconsistency of MLST and whole-genome typing publication-title: Eur. J. Clin. Microbiol. Infect. Dis. doi: 10.1007/s10096-015-2393-y – volume: 76 start-page: 4431 issue: 10 year: 2008 ident: 10.1016/j.mimet.2016.03.004_bb0175 article-title: The sialylated lipooligosaccharide outer core in Campylobacter jejuni is an important determinant for epithelial cell invasion publication-title: Infect. Immun. doi: 10.1128/IAI.00321-08 – volume: 84 start-page: 194 issue: 2 year: 2011 ident: 10.1016/j.mimet.2016.03.004_bb0010 article-title: Typing of Campylobacter jejuni and Campylobacter coli isolated from live broilers and retail broiler meat by flaA-RFLP, MLST, PFGE and REP-PCR publication-title: J. Microbiol. Methods doi: 10.1016/j.mimet.2010.11.016 – volume: 35 start-page: 759 issue: 3 year: 1997 ident: 10.1016/j.mimet.2016.03.004_bb0115 article-title: Specific identification of the enteropathogens Campylobacter jejuni and Campylobacter coli by using a PCR test based on the ceuE gene encoding a putative virulence determinant publication-title: J. Clin. Microbiol. doi: 10.1128/jcm.35.3.759-763.1997 – year: 1999 ident: 10.1016/j.mimet.2016.03.004_bb0090 – volume: 37 start-page: 510 issue: 3 year: 1999 ident: 10.1016/j.mimet.2016.03.004_bb0160 article-title: Identification of the enteropathogens Campylobacter jejuni and Campylobacter coli based on the cadF virulence gene and its product publication-title: J. Clin. Microbiol. doi: 10.1128/JCM.37.3.510-517.1999 – volume: 2013 year: 2013 ident: 10.1016/j.mimet.2016.03.004_bb0275 article-title: Antimicrobial resistance mechanisms among Campylobacter publication-title: BioMed Res. Int. doi: 10.1155/2013/340605 – volume: 10 start-page: 866 issue: 7 year: 2010 ident: 10.1016/j.mimet.2016.03.004_bb0110 article-title: Pulsed field gel electrophoresis: a review of application and interpretation in the molecular epidemiology of infectious disease publication-title: Infect. Genet. Evol. doi: 10.1016/j.meegid.2010.07.023 – volume: 95 start-page: 76 issue: 1 year: 2013 ident: 10.1016/j.mimet.2016.03.004_bb0215 article-title: Improved protocol for isolation of Campylobacter spp. from retail broiler meat and use of pulsed field gel electrophoresis for the typing of isolates publication-title: J. Microbiol. Methods doi: 10.1016/j.mimet.2013.03.008 – volume: 5 start-page: 665 issue: 9 year: 2007 ident: 10.1016/j.mimet.2016.03.004_bb0280 article-title: Campylobacter jejuni: molecular biology and pathogenesis publication-title: Nat. Rev. Microbiol. doi: 10.1038/nrmicro1718 – volume: 43 start-page: 560 issue: 5 year: 2006 ident: 10.1016/j.mimet.2016.03.004_bb0025 article-title: Antimicrobial resistance profiling and fla-typing of Irish thermophillic Campylobacter spp. of human and poultry origin publication-title: Lett. Appl. Microbiol. doi: 10.1111/j.1472-765X.2006.01987.x – volume: 11 start-page: 988 issue: 12 year: 2009 ident: 10.1016/j.mimet.2016.03.004_bb0200 article-title: Sialylation of Campylobacter jejuni lipo-oligosaccharides is associated with severe gastro-enteritis and reactive arthritis publication-title: Microbes Infect. doi: 10.1016/j.micinf.2009.07.004 – volume: 74 start-page: 7715 issue: 24 year: 2008 ident: 10.1016/j.mimet.2016.03.004_bb0225 article-title: Multilocus sequence typing, pulsed-field gel electrophoresis, and fla short variable region typing of clonal complexes of Campylobacter jejuni strains of human, bovine, and poultry origins in Luxembourg publication-title: Appl. Environ. Microbiol. doi: 10.1128/AEM.00865-08 – volume: 11 start-page: 3502 issue: 12 year: 2013 ident: 10.1016/j.mimet.2016.03.004_bb0070 article-title: Scientific opinion on the evaluation of molecular typing methods for major food-borne microbiological hazards and their use for attribution modelling, outbreak investigation and scanning surveillance: Part 1 (evaluation of methods and applications)1 publication-title: EFSA J. – volume: 75 start-page: 4277 issue: 13 year: 2009 ident: 10.1016/j.mimet.2016.03.004_bb0125 article-title: Correlation between genotypic diversity, lipooligosaccharide gene locus class variation, and caco-2 cell invasion potential of Campylobacter jejuni isolates from chicken meat and humans: contribution to virulotyping publication-title: Appl. Environ. Microbiol. doi: 10.1128/AEM.02269-08 – volume: 60 start-page: 1 issue: 1 year: 2007 ident: 10.1016/j.mimet.2016.03.004_bb0250 article-title: Pattern of antibiotic susceptibility in Campylobacter jejuni isolates of human and poultry origin publication-title: Jpn. J. Infect. Dis. doi: 10.7883/yoken.JJID.2007.1 – volume: 13 start-page: 4036 issue: 2 year: 2015 ident: 10.1016/j.mimet.2016.03.004_bb0080 article-title: The European Union summary report on antimicrobial resistance in zoonotic and indicator bacteria from humans, animals and food in 2013 publication-title: EFSA J. – volume: 203 start-page: 8 year: 2015 ident: 10.1016/j.mimet.2016.03.004_bb0120 article-title: Prevalence and characterization of Campylobacter jejuni from chicken meat sold in French retail outlets publication-title: Int. J. Food Microbiol. doi: 10.1016/j.ijfoodmicro.2015.02.013 – volume: 8 start-page: e81796 issue: 11 year: 2013 ident: 10.1016/j.mimet.2016.03.004_bb0155 article-title: Source attribution of human Campylobacter isolates by MLST and fla-typing and association of genotypes with quinolone resistance publication-title: PLoS One doi: 10.1371/journal.pone.0081796 – volume: 66 start-page: 1 issue: 1 year: 2000 ident: 10.1016/j.mimet.2016.03.004_bb0270 article-title: Genotyping of Campylobacter spp publication-title: Appl. Environ. Microbiol. doi: 10.1128/AEM.66.1.1-9.2000 – volume: 14 start-page: 200 year: 2013 ident: 10.1016/j.mimet.2016.03.004_bb0235 article-title: Comparative characterization of the virulence gene clusters (lipooligosaccharide [LOS] and capsular polysaccharide [CPS]) for Campylobacter coli, Campylobacter jejuni subsp. jejuni and related Campylobacter species publication-title: Infect. Genet. Evol. doi: 10.1016/j.meegid.2012.12.010 – volume: 145 start-page: 395 issue: 2–3 year: 2011 ident: 10.1016/j.mimet.2016.03.004_bb0135 article-title: Prevalence of potentially neuropathic Campylobacter jejuni strains on commercial broiler chicken products publication-title: Int. J. Food Microbiol. doi: 10.1016/j.ijfoodmicro.2010.12.027 – volume: 43 start-page: 2315 issue: 5 year: 2005 ident: 10.1016/j.mimet.2016.03.004_bb0190 article-title: Extended multilocus sequence typing system for Campylobacter coli, C. lari, C. upsaliensis, and C. helveticus publication-title: J. Clin. Microbiol. doi: 10.1128/JCM.43.5.2315-2329.2005 – volume: 41 start-page: 4058 issue: 9 year: 2003 ident: 10.1016/j.mimet.2016.03.004_bb0245 article-title: Clonal complexes of Campylobacter jejuni identified by multilocus sequence typing correlate with strain associations identified by multilocus enzyme electrophoresis publication-title: J. Clin. Microbiol. doi: 10.1128/JCM.41.9.4058-4067.2003
SSID	ssj0015348
Score	2.2909203
Snippet	The aim of this study was to compare different typing methods, individually and combined, for use in the monitoring of Campylobacter in food. Campylobacter...
SourceID	proquest pubmed crossref elsevier
SourceType	Aggregation Database Index Database Enrichment Source Publisher
StartPage	33
SubjectTerms	Animals antibiotic resistance Antimicrobial resistance Bacterial Typing Techniques - methods Bacterial Typing Techniques - standards Broiler meat Campylobacter coli Campylobacter coli - classification Campylobacter coli - genetics Campylobacter coli - isolation & purification Campylobacter jejuni Campylobacter jejuni - classification Campylobacter jejuni - genetics Campylobacter jejuni - isolation & purification chicken meat Drug Resistance, Multiple, Bacterial - genetics flaA-RFLP flagellin Flagellin - genetics Food Food Microbiology - methods genes Genotyping Techniques - methods Genotyping Techniques - standards lipooligosaccharides Lipopolysaccharides - classification Meat - microbiology meat carcasses MLST monitoring multilocus sequence typing Multilocus Sequence Typing - methods Phenotype Polymorphism, Restriction Fragment Length Poultry - microbiology restriction fragment length polymorphism Typing methods virulence Virulence Factors - genetics
Title	Discriminative power of Campylobacter phenotypic and genotypic typing methods
URI	https://dx.doi.org/10.1016/j.mimet.2016.03.004 https://www.ncbi.nlm.nih.gov/pubmed/26996762 https://www.proquest.com/docview/1787475183 https://www.proquest.com/docview/1790965680 https://www.proquest.com/docview/2000338261
Volume	125
WOSCitedRecordID	wos000376702200006&url=https%3A%2F%2Fcvtisr.summon.serialssolutions.com%2F%23%21%2Fsearch%3Fho%3Df%26include.ft.matches%3Dt%26l%3Dnull%26q%3D
hasFullText	1
inHoldings	1
isFullTextHit
isPrint
journalDatabaseRights	– providerCode: PRVESC databaseName: Elsevier SD Freedom Collection Journals 2021 customDbUrl: eissn: 1872-8359 dateEnd: 99991231 omitProxy: false ssIdentifier: ssj0015348 issn: 0167-7012 databaseCode: AIEXJ dateStart: 19950101 isFulltext: true titleUrlDefault: https://www.sciencedirect.com providerName: Elsevier
link	http://cvtisr.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwtV1Lj9MwELbKLkhcEM-lPFZG4laycp62jytYXoIVEgVVXKLEjVdZtUnVdh_dn8EvZsZO3JZVK_bAxWpTx4rzTcdjz8w3hLxmfjYUQ8k8FujQi6SWniwiBlsVrGnMs1yb9OifX_jxsRgM5LdO53ebC3M-4lUlLi_l5L9CDdcAbEydvQHcblC4AJ8BdGgBdmj_Cfh3JWoCjHAxUUETLINms7DGkwXSfyA9cw9Du-r5YtLQtZ64b9hWJ01l6dkG23VcOv4mA_Jqb2MVY6ToSv7M1Cn_78WovChrtDmNU6mP8UlXDnaXmdicA_U-HLhBi94vU1XbHiUg89TqkYWfLEOr2lNM0M6c-etqOIhXFKllx2iWZEt3dE3Z23OH04NxCbPEKL3E8tVGy7Wt9ef_teS5QMQ2xu00NYOkOEjKwtRQzO4GPJagKXcPPx0NPjvfVByammxuEi2XlYkavPYsm-ydTfsZY9f075N7Daj00ArSA9Ipqofkji1RunhEvq6LEzXiRGtN18SJLsWJAtzUiRO14kQbAXlMfrw_6r_96DUlODwVSX_u5Urlfs4LWIsikTEpWKziMMiyPJZg6GeB5r5WfhjBzlhxrpgsAjGEF4RdhdbhE7JT1VXxlFDYl0iWCz_OIxFhNctCaBVnGinfmOKiS4L2RaWq4afHMimjdAtIXfLG3TSx9CzbuyctAmljYVrLMQWZ2n7jqxYv-HGGTrWsKuqzWerDiheh7zLc1kciyVIi2OY-mDIXhrDZ97tkzwqEm1GQSJmA1fLsZrN9Tu4u_30vyM58ela8JLfV-bycTffJLT4Q-41w_wFOOM0j
linkProvider	Elsevier
openUrl	ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Discriminative+power+of+Campylobacter+phenotypic+and+genotypic+typing+methods&rft.jtitle=Journal+of+microbiological+methods&rft.au=Duarte%2C+Alexandra&rft.au=Seliwiorstow%2C+Tomasz&rft.au=Miller%2C+William+G.&rft.au=De+Zutter%2C+Lieven&rft.date=2016-06-01&rft.issn=0167-7012&rft.volume=125&rft.spage=33&rft.epage=39&rft_id=info:doi/10.1016%2Fj.mimet.2016.03.004&rft.externalDBID=n%2Fa&rft.externalDocID=10_1016_j_mimet_2016_03_004
thumbnail_l	http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=0167-7012&client=summon
thumbnail_m	http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=0167-7012&client=summon
thumbnail_s	http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=0167-7012&client=summon