Sparse allele vectors and the savvy software suite

Abstract Summary The sparse allele vectors file format is an efficient storage format for large-scale DNA variation data and is designed for high throughput association analysis by leveraging techniques for fast deserialization of data into computer memory. A command line interface has been develope...

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Vydáno v:Bioinformatics (Oxford, England) Ročník 37; číslo 22; s. 4248 - 4250
Hlavní autoři: LeFaive, Jonathon, Smith, Albert V, Kang, Hyun Min, Abecasis, Gonçalo
Médium: Journal Article
Jazyk:angličtina
Vydáno: England Oxford University Press 18.11.2021
Oxford Publishing Limited (England)
Témata:
Alleles
Applications Notes
Association analysis
Availability
Bioinformatics
Data analysis
Format
Line interfaces
Software
Software packages
ISSN:1367-4803, 1367-4811, 1367-4811
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Shrnutí:Abstract Summary The sparse allele vectors file format is an efficient storage format for large-scale DNA variation data and is designed for high throughput association analysis by leveraging techniques for fast deserialization of data into computer memory. A command line interface has been developed to complement the storage format and supports basic features like importing, exporting and subsetting. Additionally, a C++ programming API is available allowing for easy integration into analysis software. Availability and implementation https://github.com/statgen/savvy. Supplementary information Supplementary data are available at Bioinformatics online.
Bibliografie:SourceType-Scholarly Journals-1
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ISSN:1367-4803
1367-4811
1367-4811
DOI:10.1093/bioinformatics/btab378