Sparse allele vectors and the savvy software suite

Abstract Summary The sparse allele vectors file format is an efficient storage format for large-scale DNA variation data and is designed for high throughput association analysis by leveraging techniques for fast deserialization of data into computer memory. A command line interface has been develope...

Celý popis

Uložené v:
Podrobná bibliografia
Vydané v:Bioinformatics (Oxford, England) Ročník 37; číslo 22; s. 4248 - 4250
Hlavní autori: LeFaive, Jonathon, Smith, Albert V, Kang, Hyun Min, Abecasis, Gonçalo
Médium: Journal Article
Jazyk:English
Vydavateľské údaje: England Oxford University Press 18.11.2021
Oxford Publishing Limited (England)
Predmet:
Alleles
Applications Notes
Association analysis
Availability
Bioinformatics
Data analysis
Format
Line interfaces
Software
Software packages
ISSN:1367-4803, 1367-4811, 1367-4811
On-line prístup:Získať plný text
Tagy: Pridať tag
Žiadne tagy, Buďte prvý, kto otaguje tento záznam!
Popis
Shrnutí:Abstract Summary The sparse allele vectors file format is an efficient storage format for large-scale DNA variation data and is designed for high throughput association analysis by leveraging techniques for fast deserialization of data into computer memory. A command line interface has been developed to complement the storage format and supports basic features like importing, exporting and subsetting. Additionally, a C++ programming API is available allowing for easy integration into analysis software. Availability and implementation https://github.com/statgen/savvy. Supplementary information Supplementary data are available at Bioinformatics online.
Bibliografia:SourceType-Scholarly Journals-1
content type line 14
ObjectType-Report-1
ObjectType-Article-1
ObjectType-Feature-2
content type line 23
ISSN:1367-4803
1367-4811
1367-4811
DOI:10.1093/bioinformatics/btab378