A dynamic programming algorithm for identification of triplex-forming sequences

Motivation: Current methods for identification of potential triplex-forming sequences in genomes and similar sequence sets rely primarily on detecting homopurine and homopyrimidine tracts. Procedures capable of detecting sequences supporting imperfect, but structurally feasible intramolecular triple...

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Bibliographic Details
Published in:	Bioinformatics Vol. 27; no. 18; pp. 2510 - 2517
Main Authors:	Lexa, Matej, Martínek, Tomáš, Burgetová, Ivana, Kopeček, Daniel, Brázdová, Marie
Format:	Journal Article
Language:	English
Published:	Oxford Oxford University Press 15.09.2011
Subjects:	Algorithms Base Pair Mismatch Base Sequence Biological and medical sciences DNA - chemistry DNA - metabolism Escherichia coli K12 - genetics Fundamental and applied biological sciences. Psychology General aspects Genome Humans Inverted Repeat Sequences Likelihood Functions Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects) Nucleic Acid Conformation Sequence Analysis, DNA - methods System identification Dynamic programming Dynamics Algorithm
ISSN:	1367-4803, 1367-4811, 1367-4811, 1460-2059
Online Access:	Get full text
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