Ectopic activation of germline and placental genes identifies aggressive metastasis-prone lung cancers

Activation of normally silent tissue-specific genes and the resulting cell "identity crisis" are the unexplored consequences of malignant epigenetic reprogramming. We designed a strategy for investigating this reprogramming, which consisted of identifying a large number of tissue-restricte...

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Published in:Science translational medicine Vol. 5; no. 186; p. 186ra66
Main Authors: Rousseaux, Sophie, Debernardi, Alexandra, Jacquiau, Baptiste, Vitte, Anne-Laure, Vesin, Aurélien, Nagy-Mignotte, Hélène, Moro-Sibilot, Denis, Brichon, Pierre-Yves, Lantuejoul, Sylvie, Hainaut, Pierre, Laffaire, Julien, de Reyniès, Aurélien, Beer, David G, Timsit, Jean-François, Brambilla, Christian, Brambilla, Elisabeth, Khochbin, Saadi
Format: Journal Article
Language:English
Published: United States 22.05.2013
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ISSN:1946-6242, 1946-6242
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Abstract Activation of normally silent tissue-specific genes and the resulting cell "identity crisis" are the unexplored consequences of malignant epigenetic reprogramming. We designed a strategy for investigating this reprogramming, which consisted of identifying a large number of tissue-restricted genes that are epigenetically silenced in normal somatic cells and then detecting their expression in cancer. This approach led to the demonstration that large-scale "off-context" gene activations systematically occur in a variety of cancer types. In our series of 293 lung tumors, we identified an ectopic gene expression signature associated with a subset of highly aggressive tumors, which predicted poor prognosis independently of the TNM (tumor size, node positivity, and metastasis) stage or histological subtype. The ability to isolate these tumors allowed us to reveal their common molecular features characterized by the acquisition of embryonic stem cell/germ cell gene expression profiles and the down-regulation of immune response genes. The methodical recognition of ectopic gene activations in cancer cells could serve as a basis for gene signature-guided tumor stratification, as well as for the discovery of oncogenic mechanisms, and expand the understanding of the biology of very aggressive tumors.
AbstractList Activation of normally silent tissue-specific genes and the resulting cell "identity crisis" are the unexplored consequences of malignant epigenetic reprogramming. We designed a strategy for investigating this reprogramming, which consisted of identifying a large number of tissue-restricted genes that are epigenetically silenced in normal somatic cells and then detecting their expression in cancer. This approach led to the demonstration that large-scale "off-context" gene activations systematically occur in a variety of cancer types. In our series of 293 lung tumors, we identified an ectopic gene expression signature associated with a subset of highly aggressive tumors, which predicted poor prognosis independently of the TNM (tumor size, node positivity, and metastasis) stage or histological subtype. The ability to isolate these tumors allowed us to reveal their common molecular features characterized by the acquisition of embryonic stem cell/germ cell gene expression profiles and the down-regulation of immune response genes. The methodical recognition of ectopic gene activations in cancer cells could serve as a basis for gene signature-guided tumor stratification, as well as for the discovery of oncogenic mechanisms, and expand the understanding of the biology of very aggressive tumors.
Activation of normally silent tissue-specific genes and the resulting cell "identity crisis" are the unexplored consequences of malignant epigenetic reprogramming. We designed a strategy for investigating this reprogramming, which consisted of identifying a large number of tissue-restricted genes that are epigenetically silenced in normal somatic cells and then detecting their expression in cancer. This approach led to the demonstration that large-scale "off-context" gene activations systematically occur in a variety of cancer types. In our series of 293 lung tumors, we identified an ectopic gene expression signature associated with a subset of highly aggressive tumors, which predicted poor prognosis independently of the TNM (tumor size, node positivity, and metastasis) stage or histological subtype. The ability to isolate these tumors allowed us to reveal their common molecular features characterized by the acquisition of embryonic stem cell/germ cell gene expression profiles and the down-regulation of immune response genes. The methodical recognition of ectopic gene activations in cancer cells could serve as a basis for gene signature-guided tumor stratification, as well as for the discovery of oncogenic mechanisms, and expand the understanding of the biology of very aggressive tumors.Activation of normally silent tissue-specific genes and the resulting cell "identity crisis" are the unexplored consequences of malignant epigenetic reprogramming. We designed a strategy for investigating this reprogramming, which consisted of identifying a large number of tissue-restricted genes that are epigenetically silenced in normal somatic cells and then detecting their expression in cancer. This approach led to the demonstration that large-scale "off-context" gene activations systematically occur in a variety of cancer types. In our series of 293 lung tumors, we identified an ectopic gene expression signature associated with a subset of highly aggressive tumors, which predicted poor prognosis independently of the TNM (tumor size, node positivity, and metastasis) stage or histological subtype. The ability to isolate these tumors allowed us to reveal their common molecular features characterized by the acquisition of embryonic stem cell/germ cell gene expression profiles and the down-regulation of immune response genes. The methodical recognition of ectopic gene activations in cancer cells could serve as a basis for gene signature-guided tumor stratification, as well as for the discovery of oncogenic mechanisms, and expand the understanding of the biology of very aggressive tumors.
Author Brichon, Pierre-Yves
Beer, David G
Rousseaux, Sophie
Nagy-Mignotte, Hélène
Brambilla, Christian
Moro-Sibilot, Denis
Hainaut, Pierre
Laffaire, Julien
de Reyniès, Aurélien
Lantuejoul, Sylvie
Timsit, Jean-François
Debernardi, Alexandra
Jacquiau, Baptiste
Vitte, Anne-Laure
Vesin, Aurélien
Brambilla, Elisabeth
Khochbin, Saadi
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  givenname: Sophie
  surname: Rousseaux
  fullname: Rousseaux, Sophie
  email: sophie.rousseaux@ujf-grenoble.fr
  organization: INSERM, U823, Université Joseph Fourier, Grenoble 1, Institut Albert Bonniot, Grenoble F-38700, France. sophie.rousseaux@ujf-grenoble.fr
– sequence: 2
  givenname: Alexandra
  surname: Debernardi
  fullname: Debernardi, Alexandra
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  givenname: Baptiste
  surname: Jacquiau
  fullname: Jacquiau, Baptiste
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  fullname: Vitte, Anne-Laure
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  fullname: Vesin, Aurélien
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  surname: Moro-Sibilot
  fullname: Moro-Sibilot, Denis
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  surname: Brichon
  fullname: Brichon, Pierre-Yves
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  surname: Lantuejoul
  fullname: Lantuejoul, Sylvie
– sequence: 10
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  surname: Hainaut
  fullname: Hainaut, Pierre
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  surname: Laffaire
  fullname: Laffaire, Julien
– sequence: 12
  givenname: Aurélien
  surname: de Reyniès
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– sequence: 13
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  surname: Beer
  fullname: Beer, David G
– sequence: 14
  givenname: Jean-François
  surname: Timsit
  fullname: Timsit, Jean-François
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  givenname: Christian
  surname: Brambilla
  fullname: Brambilla, Christian
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  givenname: Elisabeth
  surname: Brambilla
  fullname: Brambilla, Elisabeth
– sequence: 17
  givenname: Saadi
  surname: Khochbin
  fullname: Khochbin, Saadi
BackLink https://www.ncbi.nlm.nih.gov/pubmed/23698379$$D View this record in MEDLINE/PubMed
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Snippet Activation of normally silent tissue-specific genes and the resulting cell "identity crisis" are the unexplored consequences of malignant epigenetic...
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SubjectTerms Animals
Cell Line, Tumor
DNA Methylation - genetics
Epigenesis, Genetic
Female
Gene Expression Regulation, Neoplastic
Germ Cells - metabolism
Humans
Lung Neoplasms - drug therapy
Lung Neoplasms - genetics
Lung Neoplasms - pathology
Neoplasm Invasiveness
Neoplasm Metastasis - genetics
Neoplasm Staging
Organ Specificity
Placenta - metabolism
Pregnancy
Prognosis
Promoter Regions, Genetic - genetics
Reproducibility of Results
Transcriptome
Title Ectopic activation of germline and placental genes identifies aggressive metastasis-prone lung cancers
URI https://www.ncbi.nlm.nih.gov/pubmed/23698379
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