Single pass streaming BLAST on FPGAs

Approximate string matching is fundamental to bioinformatics and has been the subject of numerous FPGA acceleration studies. We address issues with respect to FPGA implementations of both BLAST- and dynamic-programming- (DP) based methods. Our primary contribution is a new algorithm for emulating th...

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Vydané v:	Parallel computing Ročník 33; číslo 10; s. 741 - 756
Hlavní autori:	Herbordt, Martin C., Model, Josh, Sukhwani, Bharat, Gu, Yongfeng, VanCourt, Tom
Médium:	Journal Article
Jazyk:	English
Vydavateľské údaje:	Netherlands Elsevier B.V 01.11.2007
Predmet:	Bioinformatics Computational accelerators Configurable computing High performance computing Configurable computing High performance computing Computational accelerators Bioinformatics
ISSN:	0167-8191, 1872-7336
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