ggtranscript: an R package for the visualization and interpretation of transcript isoforms using ggplot2
Abstract Motivation The advent of long-read sequencing technologies has increased demand for the visualization and interpretation of transcripts. However, tools that perform such visualizations remain inflexible and lack the ability to easily identify differences between transcript structures. Here,...
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| Vydané v: | Bioinformatics Ročník 38; číslo 15; s. 3844 - 3846 |
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| Hlavní autori: | , , , , |
| Médium: | Journal Article |
| Jazyk: | English |
| Vydavateľské údaje: |
England
Oxford University Press
02.08.2022
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| Predmet: | |
| ISSN: | 1367-4803, 1367-4811, 1460-2059, 1367-4811 |
| On-line prístup: | Získať plný text |
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| Shrnutí: | Abstract
Motivation
The advent of long-read sequencing technologies has increased demand for the visualization and interpretation of transcripts. However, tools that perform such visualizations remain inflexible and lack the ability to easily identify differences between transcript structures. Here, we introduce ggtranscript, an R package that provides a fast and flexible method to visualize and compare transcripts. As a ggplot2 extension, ggtranscript inherits the functionality and familiarity of ggplot2 making it easy to use.
Availability and implementation
ggtranscript is an R package available at https://github.com/dzhang32/ggtranscript (DOI: https://doi.org/10.5281/zenodo.6374061) via an open-source MIT licence. Further documentation is available at https://dzhang32.github.io/ggtranscript/. |
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| Bibliografia: | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 The authors wish it to be known that, in their opinion, Emil K. Gustavsson and David Zhang should be regarded as Joint First Authors. |
| ISSN: | 1367-4803 1367-4811 1460-2059 1367-4811 |
| DOI: | 10.1093/bioinformatics/btac409 |