Qualimap: evaluating next-generation sequencing alignment data

Motivation: The sequence alignment/map (SAM) and the binary alignment/map (BAM) formats have become the standard method of representation of nucleotide sequence alignments for next-generation sequencing data. SAM/BAM files usually contain information from tens to hundreds of millions of reads. Often...

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Bibliographic Details

Published in:	Bioinformatics (Oxford, England) Vol. 28; no. 20; pp. 2678 - 2679
Main Authors:	García-Alcalde, Fernando, Okonechnikov, Konstantin, Carbonell, José, Cruz, Luis M., Götz, Stefan, Tarazona, Sonia, Dopazo, Joaquín, Meyer, Thomas F., Conesa, Ana
Format:	Journal Article
Language:	English
Published:	Oxford Oxford University Press 15.10.2012
Subjects:	Algorithms Biological and medical sciences Fundamental and applied biological sciences. Psychology General aspects Genomics High-Throughput Nucleotide Sequencing Humans Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects) Quality Control Sequence Alignment - standards Software Sequencing Data
ISSN:	1367-4803, 1367-4811, 1367-4811
Online Access:	Get full text
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