Polymorphisms in the vitamin D receptor gene are associated with reduced rate of sputum culture conversion in multidrug-resistant tuberculosis patients in South Africa
Vitamin D modulates the inflammatory and immune response to tuberculosis (TB) and also mediates the induction of the antimicrobial peptide cathelicidin. Deficiency of 25-hydroxyvitamin D and single nucleotide polymorphisms (SNPs) in the vitamin D receptor (VDR) gene may increase the risk of TB disea...
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| Published in: | PloS one Vol. 12; no. 7; p. e0180916 |
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| ISSN: | 1932-6203, 1932-6203 |
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| Abstract | Vitamin D modulates the inflammatory and immune response to tuberculosis (TB) and also mediates the induction of the antimicrobial peptide cathelicidin. Deficiency of 25-hydroxyvitamin D and single nucleotide polymorphisms (SNPs) in the vitamin D receptor (VDR) gene may increase the risk of TB disease and decrease culture conversion rates in drug susceptible TB. Whether these VDR SNPs are found in African populations or impact multidrug-resistant (MDR) TB treatment has not been established. We aimed to determine if SNPs in the VDR gene were associated with sputum culture conversion among a cohort of MDR TB patients in South Africa.
We conducted a prospective cohort study of adult MDR TB patients receiving second-line TB treatment in KwaZulu-Natal province. Subjects had monthly sputum cultures performed. In a subset of participants, whole blood samples were obtained for genomic analyses. Genomic DNA was extracted and genotyped with Affymetrix Axiom Pan-African Array. Cox proportional models were used to determine the association between VDR SNPs and rate of culture conversion.
Genomic analyses were performed on 91 MDR TB subjects enrolled in the sub-study; 60% were female and median age was 35 years (interquartile range [IQR] 29-42). Smoking was reported by 21% of subjects and most subjects had HIV (80%), were smear negative (57%), and had cavitary disease (55%). Overall, 87 (96%) subjects initially converted cultures to negative, with median time to culture conversion of 57 days (IQR 17-114). Of 121 VDR SNPs examined, 10 were significantly associated (p<0.01) with rate of sputum conversion in multivariable analyses. Each additional risk allele on SNP rs74085240 delayed culture conversion significantly (adjusted hazard ratio 0.30, 95% confidence interval 0.14-0.67).
Polymorphisms in the VDR gene were associated with rate of sputum culture conversion in MDR TB patients in this high HIV prevalence setting in South Africa. |
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| AbstractList | Vitamin D modulates the inflammatory and immune response to tuberculosis (TB) and also mediates the induction of the antimicrobial peptide cathelicidin. Deficiency of 25-hydroxyvitamin D and single nucleotide polymorphisms (SNPs) in the vitamin D receptor (VDR) gene may increase the risk of TB disease and decrease culture conversion rates in drug susceptible TB. Whether these VDR SNPs are found in African populations or impact multidrug-resistant (MDR) TB treatment has not been established. We aimed to determine if SNPs in the VDR gene were associated with sputum culture conversion among a cohort of MDR TB patients in South Africa.BACKGROUNDVitamin D modulates the inflammatory and immune response to tuberculosis (TB) and also mediates the induction of the antimicrobial peptide cathelicidin. Deficiency of 25-hydroxyvitamin D and single nucleotide polymorphisms (SNPs) in the vitamin D receptor (VDR) gene may increase the risk of TB disease and decrease culture conversion rates in drug susceptible TB. Whether these VDR SNPs are found in African populations or impact multidrug-resistant (MDR) TB treatment has not been established. We aimed to determine if SNPs in the VDR gene were associated with sputum culture conversion among a cohort of MDR TB patients in South Africa.We conducted a prospective cohort study of adult MDR TB patients receiving second-line TB treatment in KwaZulu-Natal province. Subjects had monthly sputum cultures performed. In a subset of participants, whole blood samples were obtained for genomic analyses. Genomic DNA was extracted and genotyped with Affymetrix Axiom Pan-African Array. Cox proportional models were used to determine the association between VDR SNPs and rate of culture conversion.METHODSWe conducted a prospective cohort study of adult MDR TB patients receiving second-line TB treatment in KwaZulu-Natal province. Subjects had monthly sputum cultures performed. In a subset of participants, whole blood samples were obtained for genomic analyses. Genomic DNA was extracted and genotyped with Affymetrix Axiom Pan-African Array. Cox proportional models were used to determine the association between VDR SNPs and rate of culture conversion.Genomic analyses were performed on 91 MDR TB subjects enrolled in the sub-study; 60% were female and median age was 35 years (interquartile range [IQR] 29-42). Smoking was reported by 21% of subjects and most subjects had HIV (80%), were smear negative (57%), and had cavitary disease (55%). Overall, 87 (96%) subjects initially converted cultures to negative, with median time to culture conversion of 57 days (IQR 17-114). Of 121 VDR SNPs examined, 10 were significantly associated (p<0.01) with rate of sputum conversion in multivariable analyses. Each additional risk allele on SNP rs74085240 delayed culture conversion significantly (adjusted hazard ratio 0.30, 95% confidence interval 0.14-0.67).RESULTSGenomic analyses were performed on 91 MDR TB subjects enrolled in the sub-study; 60% were female and median age was 35 years (interquartile range [IQR] 29-42). Smoking was reported by 21% of subjects and most subjects had HIV (80%), were smear negative (57%), and had cavitary disease (55%). Overall, 87 (96%) subjects initially converted cultures to negative, with median time to culture conversion of 57 days (IQR 17-114). Of 121 VDR SNPs examined, 10 were significantly associated (p<0.01) with rate of sputum conversion in multivariable analyses. Each additional risk allele on SNP rs74085240 delayed culture conversion significantly (adjusted hazard ratio 0.30, 95% confidence interval 0.14-0.67).Polymorphisms in the VDR gene were associated with rate of sputum culture conversion in MDR TB patients in this high HIV prevalence setting in South Africa.CONCLUSIONSPolymorphisms in the VDR gene were associated with rate of sputum culture conversion in MDR TB patients in this high HIV prevalence setting in South Africa. Background Vitamin D modulates the inflammatory and immune response to tuberculosis (TB) and also mediates the induction of the antimicrobial peptide cathelicidin. Deficiency of 25-hydroxyvitamin D and single nucleotide polymorphisms (SNPs) in the vitamin D receptor (VDR) gene may increase the risk of TB disease and decrease culture conversion rates in drug susceptible TB. Whether these VDR SNPs are found in African populations or impact multidrug-resistant (MDR) TB treatment has not been established. We aimed to determine if SNPs in the VDR gene were associated with sputum culture conversion among a cohort of MDR TB patients in South Africa. Methods We conducted a prospective cohort study of adult MDR TB patients receiving second-line TB treatment in KwaZulu-Natal province. Subjects had monthly sputum cultures performed. In a subset of participants, whole blood samples were obtained for genomic analyses. Genomic DNA was extracted and genotyped with Affymetrix Axiom Pan-African Array. Cox proportional models were used to determine the association between VDR SNPs and rate of culture conversion. Results Genomic analyses were performed on 91 MDR TB subjects enrolled in the sub-study; 60% were female and median age was 35 years (interquartile range [IQR] 29–42). Smoking was reported by 21% of subjects and most subjects had HIV (80%), were smear negative (57%), and had cavitary disease (55%). Overall, 87 (96%) subjects initially converted cultures to negative, with median time to culture conversion of 57 days (IQR 17–114). Of 121 VDR SNPs examined, 10 were significantly associated (p<0.01) with rate of sputum conversion in multivariable analyses. Each additional risk allele on SNP rs74085240 delayed culture conversion significantly (adjusted hazard ratio 0.30, 95% confidence interval 0.14–0.67). Conclusions Polymorphisms in the VDR gene were associated with rate of sputum culture conversion in MDR TB patients in this high HIV prevalence setting in South Africa. Vitamin D modulates the inflammatory and immune response to tuberculosis (TB) and also mediates the induction of the antimicrobial peptide cathelicidin. Deficiency of 25-hydroxyvitamin D and single nucleotide polymorphisms (SNPs) in the vitamin D receptor (VDR) gene may increase the risk of TB disease and decrease culture conversion rates in drug susceptible TB. Whether these VDR SNPs are found in African populations or impact multidrug-resistant (MDR) TB treatment has not been established. We aimed to determine if SNPs in the VDR gene were associated with sputum culture conversion among a cohort of MDR TB patients in South Africa.We conducted a prospective cohort study of adult MDR TB patients receiving second-line TB treatment in KwaZulu-Natal province. Subjects had monthly sputum cultures performed. In a subset of participants, whole blood samples were obtained for genomic analyses. Genomic DNA was extracted and genotyped with Affymetrix Axiom Pan-African Array. Cox proportional models were used to determine the association between VDR SNPs and rate of culture conversion.Genomic analyses were performed on 91 MDR TB subjects enrolled in the sub-study; 60% were female and median age was 35 years (interquartile range [IQR] 29-42). Smoking was reported by 21% of subjects and most subjects had HIV (80%), were smear negative (57%), and had cavitary disease (55%). Overall, 87 (96%) subjects initially converted cultures to negative, with median time to culture conversion of 57 days (IQR 17-114). Of 121 VDR SNPs examined, 10 were significantly associated (p<0.01) with rate of sputum conversion in multivariable analyses. Each additional risk allele on SNP rs74085240 delayed culture conversion significantly (adjusted hazard ratio 0.30, 95% confidence interval 0.14-0.67).Polymorphisms in the VDR gene were associated with rate of sputum culture conversion in MDR TB patients in this high HIV prevalence setting in South Africa. Vitamin D modulates the inflammatory and immune response to tuberculosis (TB) and also mediates the induction of the antimicrobial peptide cathelicidin. Deficiency of 25-hydroxyvitamin D and single nucleotide polymorphisms (SNPs) in the vitamin D receptor (VDR) gene may increase the risk of TB disease and decrease culture conversion rates in drug susceptible TB. Whether these VDR SNPs are found in African populations or impact multidrug-resistant (MDR) TB treatment has not been established. We aimed to determine if SNPs in the VDR gene were associated with sputum culture conversion among a cohort of MDR TB patients in South Africa. We conducted a prospective cohort study of adult MDR TB patients receiving second-line TB treatment in KwaZulu-Natal province. Subjects had monthly sputum cultures performed. In a subset of participants, whole blood samples were obtained for genomic analyses. Genomic DNA was extracted and genotyped with Affymetrix Axiom Pan-African Array. Cox proportional models were used to determine the association between VDR SNPs and rate of culture conversion. Genomic analyses were performed on 91 MDR TB subjects enrolled in the sub-study; 60% were female and median age was 35 years (interquartile range [IQR] 29-42). Smoking was reported by 21% of subjects and most subjects had HIV (80%), were smear negative (57%), and had cavitary disease (55%). Overall, 87 (96%) subjects initially converted cultures to negative, with median time to culture conversion of 57 days (IQR 17-114). Of 121 VDR SNPs examined, 10 were significantly associated (p<0.01) with rate of sputum conversion in multivariable analyses. Each additional risk allele on SNP rs74085240 delayed culture conversion significantly (adjusted hazard ratio 0.30, 95% confidence interval 0.14-0.67). Polymorphisms in the VDR gene were associated with rate of sputum culture conversion in MDR TB patients in this high HIV prevalence setting in South Africa. Background Vitamin D modulates the inflammatory and immune response to tuberculosis (TB) and also mediates the induction of the antimicrobial peptide cathelicidin. Deficiency of 25-hydroxyvitamin D and single nucleotide polymorphisms (SNPs) in the vitamin D receptor (VDR) gene may increase the risk of TB disease and decrease culture conversion rates in drug susceptible TB. Whether these VDR SNPs are found in African populations or impact multidrug-resistant (MDR) TB treatment has not been established. We aimed to determine if SNPs in the VDR gene were associated with sputum culture conversion among a cohort of MDR TB patients in South Africa. Methods We conducted a prospective cohort study of adult MDR TB patients receiving second-line TB treatment in KwaZulu-Natal province. Subjects had monthly sputum cultures performed. In a subset of participants, whole blood samples were obtained for genomic analyses. Genomic DNA was extracted and genotyped with Affymetrix Axiom Pan-African Array. Cox proportional models were used to determine the association between VDR SNPs and rate of culture conversion. Results Genomic analyses were performed on 91 MDR TB subjects enrolled in the sub-study; 60% were female and median age was 35 years (interquartile range [IQR] 29–42). Smoking was reported by 21% of subjects and most subjects had HIV (80%), were smear negative (57%), and had cavitary disease (55%). Overall, 87 (96%) subjects initially converted cultures to negative, with median time to culture conversion of 57 days (IQR 17–114). Of 121 VDR SNPs examined, 10 were significantly associated (p<0.01) with rate of sputum conversion in multivariable analyses. Each additional risk allele on SNP rs74085240 delayed culture conversion significantly (adjusted hazard ratio 0.30, 95% confidence interval 0.14–0.67). Conclusions Polymorphisms in the VDR gene were associated with rate of sputum culture conversion in MDR TB patients in this high HIV prevalence setting in South Africa. |
| Author | Sun, Yan V. Hui, Qin Moodley, Pravi Shah, N. Sarita Campbell, Angela Magee, Matthew J. Mlisana, Koleka Allana, Salim Ning, Yuming Brust, James C. M. Gandhi, Neel R. |
| AuthorAffiliation | 4 US Centers for Disease Control and Prevention, Atlanta, United States of America 1 Division of Epidemiology and Biostatistics, School of Public Health, Georgia State University, Atlanta, United States of America 2 Department of Epidemiology, Rollins School of Public Health, Emory University, Atlanta, United States of America 3 Divisions of General Internal Medicine and Infectious Diseases, Albert Einstein College of Medicine, Bronx, United States of America 5 School of Laboratory Medicine and Medical Sciences, University of KwaZulu-Natal, Durban, South Africa 6 Division of Infectious Diseases, Emory School of Medicine, Emory University, Atlanta, United States of America 7 Department of Global Health, Rollins School of Public Health, Emory University, Atlanta, United States of America Central University of Tamil Nadu, INDIA |
| AuthorAffiliation_xml | – name: 6 Division of Infectious Diseases, Emory School of Medicine, Emory University, Atlanta, United States of America – name: 2 Department of Epidemiology, Rollins School of Public Health, Emory University, Atlanta, United States of America – name: 1 Division of Epidemiology and Biostatistics, School of Public Health, Georgia State University, Atlanta, United States of America – name: 4 US Centers for Disease Control and Prevention, Atlanta, United States of America – name: Central University of Tamil Nadu, INDIA – name: 7 Department of Global Health, Rollins School of Public Health, Emory University, Atlanta, United States of America – name: 3 Divisions of General Internal Medicine and Infectious Diseases, Albert Einstein College of Medicine, Bronx, United States of America – name: 5 School of Laboratory Medicine and Medical Sciences, University of KwaZulu-Natal, Durban, South Africa |
| Author_xml | – sequence: 1 givenname: Matthew J. orcidid: 0000-0002-8068-5796 surname: Magee fullname: Magee, Matthew J. – sequence: 2 givenname: Yan V. surname: Sun fullname: Sun, Yan V. – sequence: 3 givenname: James C. M. surname: Brust fullname: Brust, James C. M. – sequence: 4 givenname: N. Sarita surname: Shah fullname: Shah, N. Sarita – sequence: 5 givenname: Yuming surname: Ning fullname: Ning, Yuming – sequence: 6 givenname: Salim surname: Allana fullname: Allana, Salim – sequence: 7 givenname: Angela surname: Campbell fullname: Campbell, Angela – sequence: 8 givenname: Qin surname: Hui fullname: Hui, Qin – sequence: 9 givenname: Koleka surname: Mlisana fullname: Mlisana, Koleka – sequence: 10 givenname: Pravi surname: Moodley fullname: Moodley, Pravi – sequence: 11 givenname: Neel R. surname: Gandhi fullname: Gandhi, Neel R. |
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| CitedBy_id | crossref_primary_10_1016_j_ijtb_2022_05_011 crossref_primary_10_1016_j_meegid_2022_105324 crossref_primary_10_1371_journal_pgen_1010387 crossref_primary_10_1007_s00403_022_02399_z crossref_primary_10_1080_16070658_2020_1757878 crossref_primary_10_1136_bmjopen_2020_039935 crossref_primary_10_1016_j_genrep_2018_08_001 crossref_primary_10_1016_j_meegid_2020_104204 crossref_primary_10_1097_MD_0000000000011732 crossref_primary_10_1016_j_rmcr_2018_09_005 crossref_primary_10_1371_journal_pone_0267917 crossref_primary_10_1080_14787210_2022_2081546 |
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| References_xml | – volume: 1 start-page: 151 issue: 4 year: 2014 ident: ref25 article-title: Vitamin D Status, Receptor Gene Polymorphisms, and Supplementation on Tuberculosis: A Systematic Review of Case-Control Studies and Randomized Controlled Trials publication-title: Journal of clinical & translational endocrinology doi: 10.1016/j.jcte.2014.08.001 – year: 2014 ident: ref18 article-title: South African National HIV Prevalence, Incidence and Behaviour Survey, 2012 – year: 2014 ident: ref19 article-title: Multi-drug resistant tuberculosis: strategic overview on MDR-TB care in South Africa – volume: 377 start-page: 242 issue: 9761 year: 2011 ident: ref10 article-title: High-dose vitamin D(3) during intensive-phase antimicrobial treatment of pulmonary tuberculosis: a double-blind randomised controlled trial publication-title: Lancet doi: 10.1016/S0140-6736(10)61889-2 – volume: 109 start-page: 15449 issue: 38 year: 2012 ident: ref23 article-title: Vitamin D accelerates resolution of inflammatory responses during tuberculosis treatment publication-title: Proceedings of the National Academy of Sciences of the United States of America doi: 10.1073/pnas.1200072109 – volume: 9 start-page: 327 issue: 3 year: 2014 ident: ref8 article-title: New insights into the interaction of Mycobacterium tuberculosis and human macrophages publication-title: Future microbiology doi: 10.2217/fmb.13.164 – volume: 62 start-page: 1 issue: RR-09 year: 2013 ident: ref2 article-title: Provisional CDC guidelines for the use and safety monitoring of bedaquiline fumarate (Sirturo) for the treatment of multidrug-resistant tuberculosis publication-title: MMWR Recommendations and reports: Morbidity and mortality weekly report Recommendations and reports / Centers for Disease Control – volume: 102 start-page: 1059 issue: 5 year: 2015 ident: ref11 article-title: High-dose vitamin D3 in adults with pulmonary tuberculosis: a double-blind randomized controlled trial publication-title: The American journal of clinical nutrition doi: 10.3945/ajcn.115.113886 – volume: 13 start-page: 22 year: 2013 ident: ref24 article-title: Vitamin D accelerates clinical recovery from tuberculosis: results of the SUCCINCT Study [Supplementary Cholecalciferol in recovery from tuberculosis]. 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| Snippet | Vitamin D modulates the inflammatory and immune response to tuberculosis (TB) and also mediates the induction of the antimicrobial peptide cathelicidin.... Background Vitamin D modulates the inflammatory and immune response to tuberculosis (TB) and also mediates the induction of the antimicrobial peptide... Background Vitamin D modulates the inflammatory and immune response to tuberculosis (TB) and also mediates the induction of the antimicrobial peptide... |
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| SubjectTerms | 25-Hydroxyvitamin D Adult Age Antiinfectives and antibacterials Biology and Life Sciences Confidence intervals Conversion Culture Deoxyribonucleic acid DNA Drug resistance Female Genomic analysis Genomics Health risks HIV HIV Infections - genetics Human immunodeficiency virus Humans Immune response Immune system Impact resistance Inflammation Male Medicine and Health Sciences Multidrug resistance Multidrug resistant organisms Patients People and Places Physical sciences Polymorphism, Single Nucleotide - genetics Populations Proportional Hazards Models Prospective Studies Receptors, Calcitriol - genetics Risk Single-nucleotide polymorphism Smear Smoking South Africa Sputum Sputum - microbiology Tuberculosis Tuberculosis, Multidrug-Resistant - genetics Vitamin D Vitamin D - analogs & derivatives Vitamin D - metabolism Vitamin D receptors |
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| Title | Polymorphisms in the vitamin D receptor gene are associated with reduced rate of sputum culture conversion in multidrug-resistant tuberculosis patients in South Africa |
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