WBSMDA: Within and Between Score for MiRNA-Disease Association prediction

Increasing evidences have indicated that microRNAs (miRNAs) are functionally associated with the development and progression of various complex human diseases. However, the roles of miRNAs in multiple biological processes or various diseases and their underlying molecular mechanisms still have not b...

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Vydáno v:Scientific reports Ročník 6; číslo 1; s. 21106
Hlavní autoři: Chen, Xing, Yan, Chenggang Clarence, Zhang, Xu, You, Zhu-Hong, Deng, Lixi, Liu, Ying, Zhang, Yongdong, Dai, Qionghai
Médium: Journal Article
Jazyk:angličtina
Vydáno: London Nature Publishing Group UK 16.02.2016
Nature Publishing Group
Témata:
631/114/2397
631/337/384/331
631/553/2695
Algorithms
Colon
Colorectal cancer
Computational Biology - methods
Computer applications
Disease
Genetic Association Studies - methods
Genetic Predisposition to Disease
Humanities and Social Sciences
Humans
Lymphoma
MicroRNAs - genetics
miRNA
Molecular modelling
multidisciplinary
Neoplasms - genetics
Prostate
Prostate cancer
Reproducibility of Results
ROC Curve
Science
Tumors
ISSN:2045-2322, 2045-2322
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Popis
Shrnutí:Increasing evidences have indicated that microRNAs (miRNAs) are functionally associated with the development and progression of various complex human diseases. However, the roles of miRNAs in multiple biological processes or various diseases and their underlying molecular mechanisms still have not been fully understood yet. Predicting potential miRNA-disease associations by integrating various heterogeneous biological datasets is of great significance to the biomedical research. Computational methods could obtain potential miRNA-disease associations in a short time, which significantly reduce the experimental time and cost. Considering the limitations in previous computational methods, we developed the model of Within and Between Score for MiRNA-Disease Association prediction (WBSMDA) to predict potential miRNAs associated with various complex diseases. WBSMDA could be applied to the diseases without any known related miRNAs. The AUC of 0.8031 based on Leave-one-out cross validation has demonstrated its reliable performance. WBSMDA was further applied to Colon Neoplasms, Prostate Neoplasms and Lymphoma for the identification of their potential related miRNAs. As a result, 90%, 84% and 80% of predicted miRNA-disease pairs in the top 50 prediction list for these three diseases have been confirmed by recent experimental literatures, respectively. It is anticipated that WBSMDA would be a useful resource for potential miRNA-disease association identification.
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These authors contributed equally to this work.
ISSN:2045-2322
2045-2322
DOI:10.1038/srep21106