Nothing in evolution makes sense except in the light of code biology

This article highlights the potential contribution of biological codes to the course and dynamics of evolution. The concept of organic codes, developed by Marcello Barbieri, has fundamentally changed our view of how living systems function. The notion that molecular interactions built on adaptors th...

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Vydané v:BioSystems Ročník 229; s. 104907
Hlavný autor: Prinz, Robert
Médium: Journal Article
Jazyk:English
Vydavateľské údaje: Ireland Elsevier B.V 01.07.2023
Predmet:
Cambrian explosion
Code biology
Codepoiesis
Codification
Complexity
Eigendynamics
Evolution
Hierarchy
Macroevolution
Marcello Barbieri
Modularity
Neural codes
Regulatory codes
Robustness
Structural codes
Macroevolution
Cambrian explosion
Codification
Modularity
Complexity
Code biology
Hierarchy
Regulatory codes
Structural codes
Codepoiesis
Marcello Barbieri
Evolution
Eigendynamics
Robustness
Neural codes
ISSN:0303-2647, 1872-8324, 1872-8324
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Abstract This article highlights the potential contribution of biological codes to the course and dynamics of evolution. The concept of organic codes, developed by Marcello Barbieri, has fundamentally changed our view of how living systems function. The notion that molecular interactions built on adaptors that arbitrarily link molecules from different “worlds” in a conventional, i.e., rule-based way, departs significantly from the law-based constraints imposed on livening things by physical and chemical mechanisms. In other words, living entities and non-living things behave like rules and laws, respectively, but this important distinction is rarely considered in current evolutionary theory. The many known codes allow quantification of codes that relate to a cell, or comparisons between different biological systems and may pave the way to a quantitative and empirical research agenda in code biology. A starting point for such an endeavour is the introduction of a simple dichotomous classification of structural and regulatory codes. This classification can be used as a tool to analyse and quantify key organising principles of the living world, such as modularity, hierarchy, and robustness, based on organic codes. The implications for evolutionary research are related to the unique dynamics of codes, or 'Eigendynamics' (self-momentum) and how they determine the behaviour of biological systems from inside, whereas physical constraints are imposed mainly from outside. A speculation on the drivers of macroevolution in light of codes is followed by the conclusion that a meaningful and comprehensive understanding of evolution depends on including codes into the equation of life.
AbstractList This article highlights the potential contribution of biological codes to the course and dynamics of evolution. The concept of organic codes, developed by Marcello Barbieri, has fundamentally changed our view of how living systems function. The notion that molecular interactions built on adaptors that arbitrarily link molecules from different "worlds" in a conventional, i.e., rule-based way, departs significantly from the law-based constraints imposed on livening things by physical and chemical mechanisms. In other words, living entities and non-living things behave like rules and laws, respectively, but this important distinction is rarely considered in current evolutionary theory. The many known codes allow quantification of codes that relate to a cell, or comparisons between different biological systems and may pave the way to a quantitative and empirical research agenda in code biology. A starting point for such an endeavour is the introduction of a simple dichotomous classification of structural and regulatory codes. This classification can be used as a tool to analyse and quantify key organising principles of the living world, such as modularity, hierarchy, and robustness, based on organic codes. The implications for evolutionary research are related to the unique dynamics of codes, or 'Eigendynamics' (self-momentum) and how they determine the behaviour of biological systems from inside, whereas physical constraints are imposed mainly from outside. A speculation on the drivers of macroevolution in light of codes is followed by the conclusion that a meaningful and comprehensive understanding of evolution depends on including codes into the equation of life.This article highlights the potential contribution of biological codes to the course and dynamics of evolution. The concept of organic codes, developed by Marcello Barbieri, has fundamentally changed our view of how living systems function. The notion that molecular interactions built on adaptors that arbitrarily link molecules from different "worlds" in a conventional, i.e., rule-based way, departs significantly from the law-based constraints imposed on livening things by physical and chemical mechanisms. In other words, living entities and non-living things behave like rules and laws, respectively, but this important distinction is rarely considered in current evolutionary theory. The many known codes allow quantification of codes that relate to a cell, or comparisons between different biological systems and may pave the way to a quantitative and empirical research agenda in code biology. A starting point for such an endeavour is the introduction of a simple dichotomous classification of structural and regulatory codes. This classification can be used as a tool to analyse and quantify key organising principles of the living world, such as modularity, hierarchy, and robustness, based on organic codes. The implications for evolutionary research are related to the unique dynamics of codes, or 'Eigendynamics' (self-momentum) and how they determine the behaviour of biological systems from inside, whereas physical constraints are imposed mainly from outside. A speculation on the drivers of macroevolution in light of codes is followed by the conclusion that a meaningful and comprehensive understanding of evolution depends on including codes into the equation of life.
This article highlights the potential contribution of biological codes to the course and dynamics of evolution. The concept of organic codes, developed by Marcello Barbieri, has fundamentally changed our view of how living systems function. The notion that molecular interactions built on adaptors that arbitrarily link molecules from different "worlds" in a conventional, i.e., rule-based way, departs significantly from the law-based constraints imposed on livening things by physical and chemical mechanisms. In other words, living entities and non-living things behave like rules and laws, respectively, but this important distinction is rarely considered in current evolutionary theory. The many known codes allow quantification of codes that relate to a cell, or comparisons between different biological systems and may pave the way to a quantitative and empirical research agenda in code biology. A starting point for such an endeavour is the introduction of a simple dichotomous classification of structural and regulatory codes. This classification can be used as a tool to analyse and quantify key organising principles of the living world, such as modularity, hierarchy, and robustness, based on organic codes. The implications for evolutionary research are related to the unique dynamics of codes, or 'Eigendynamics' (self-momentum) and how they determine the behaviour of biological systems from inside, whereas physical constraints are imposed mainly from outside. A speculation on the drivers of macroevolution in light of codes is followed by the conclusion that a meaningful and comprehensive understanding of evolution depends on including codes into the equation of life.
ArticleNumber 104907
Author Prinz, Robert
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Keywords Macroevolution
Cambrian explosion
Codification
Modularity
Complexity
Code biology
Hierarchy
Regulatory codes
Structural codes
Codepoiesis
Marcello Barbieri
Evolution
Eigendynamics
Robustness
Neural codes
Language English
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Snippet This article highlights the potential contribution of biological codes to the course and dynamics of evolution. The concept of organic codes, developed by...
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SubjectTerms Cambrian explosion
Code biology
Codepoiesis
Codification
Complexity
Eigendynamics
Evolution
Hierarchy
Macroevolution
Marcello Barbieri
Modularity
Neural codes
Regulatory codes
Robustness
Structural codes
Title Nothing in evolution makes sense except in the light of code biology
URI https://dx.doi.org/10.1016/j.biosystems.2023.104907
https://www.ncbi.nlm.nih.gov/pubmed/37207840
https://www.proquest.com/docview/2816765218
Volume 229
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