BranchAnalysis2D/3D automates morphometry analyses of branching structures

•An open-source algorithm for analysis of branching structures is presented.•Algorithm output matches output from human observers using existing analysis tools.•The algorithm is faster than human observers using other analysis tools.•BranchAnalysis2D/3D automation decreases investigator bias.•Branch...

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Bibliographic Details
Published in:	Journal of neuroscience methods Vol. 294; pp. 1 - 6
Main Authors:	Srinivasan, Aditya, Muñoz-Estrada, Jesús, Bourgeois, Justin R., Nalwalk, Julia W., Pumiglia, Kevin M., Sheen, Volney L., Ferland, Russell J.
Format:	Journal Article
Language:	English
Published:	Netherlands Elsevier B.V 15.01.2018
Subjects:	Algorithms Animals Brain - cytology Branching morphology Imaging, Three-Dimensional - methods Mice Microscopy, Confocal - methods Morphometry Neurons - cytology Observer Variation Primary cilia Reproducibility of Results Retina - anatomy & histology Software Spines Vasculature Branching morphology Morphometry Primary cilia Spines Vasculature
ISSN:	0165-0270, 1872-678X, 1872-678X
Online Access:	Get full text
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