A mini-review of the diffusion dynamics of DNA-binding proteins: experiments and models

In the course of various biological processes, specific DNA-binding proteins must efficiently find a particular target sequence/protein or a damaged site on the DNA. DNA-binding proteins perform this task based on diffusion. Nevertheless, investigations over recent decades have found that the diffus...

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Vydáno v:	Journal of the Korean Physical Society Ročník 78; číslo 5; s. 408 - 426
Hlavní autoři:	Park, Seongyu, Lee, O-chul, Durang, Xavier, Jeon, Jae-Hyung
Médium:	Journal Article
Jazyk:	angličtina
Vydáno:	Seoul The Korean Physical Society 01.03.2021 Springer Nature B.V 한국물리학회
Témata:	Binding Biological activity Deoxyribonucleic acid Diffusion DNA Mathematical and Computational Physics Particle and Nuclear Physics Physics Physics and Astronomy Proteins Review Theoretical 물리학 Sliding Hopping DNA-binding protein Anomalous diffusion Facilitated diffusion
ISSN:	0374-4884, 1976-8524
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Abstract	In the course of various biological processes, specific DNA-binding proteins must efficiently find a particular target sequence/protein or a damaged site on the DNA. DNA-binding proteins perform this task based on diffusion. Nevertheless, investigations over recent decades have found that the diffusion dynamics of DNA-binding proteins are generally complicated and, further, protein specific. In this review, we collect experimental and theoretical studies that quantify the diffusion dynamics of DNA-binding proteins and review them from the viewpoint of diffusion processes.
AbstractList	In the course of various biological processes, specific DNA-binding proteins must efficiently find a particular target sequence/protein or a damaged site on the DNA. DNA-binding proteins perform this task based on diffusion. Nevertheless, investigations over recent decades have found that the diffusion dynamics of DNA-binding proteins are generally complicated and, further, protein specific. In this review, we collect experimental and theoretical studies that quantify the diffusion dynamics of DNA-binding proteins and review them from the viewpoint of diffusion processes. In the course of various biological processes, specific DNA-binding proteins must efficiently find a particular target sequence/ protein or a damaged site on the DNA. DNA-binding proteins perform this task based on diffusion. Nevertheless, investigations over recent decades have found that the diffusion dynamics of DNA-binding proteins are generally complicated and, further, protein specific. In this review, we collect experimental and theoretical studies that quantify the diffusion dynamics of DNA-binding proteins and review them from the viewpoint of diffusion processes. KCI Citation Count: 0
Author	Lee, O-chul Park, Seongyu Jeon, Jae-Hyung Durang, Xavier
Author_xml	– sequence: 1 givenname: Seongyu surname: Park fullname: Park, Seongyu organization: Department of Physics, Pohang University of Science and Technology (POSTECH) – sequence: 2 givenname: O-chul surname: Lee fullname: Lee, O-chul organization: Department of Physics, Pohang University of Science and Technology (POSTECH) – sequence: 3 givenname: Xavier surname: Durang fullname: Durang, Xavier organization: Department of Physics, Pohang University of Science and Technology (POSTECH) – sequence: 4 givenname: Jae-Hyung surname: Jeon fullname: Jeon, Jae-Hyung email: jeonjh@postech.ac.kr organization: Department of Physics, Pohang University of Science and Technology (POSTECH)
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Keywords	Sliding Hopping DNA-binding protein Anomalous diffusion Facilitated diffusion
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SubjectTerms	Binding Biological activity Deoxyribonucleic acid Diffusion DNA Mathematical and Computational Physics Particle and Nuclear Physics Physics Physics and Astronomy Proteins Review Theoretical 물리학
Title	A mini-review of the diffusion dynamics of DNA-binding proteins: experiments and models
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