Effectidor II: a pan-genomic AI-based algorithm for the prediction of type III secretion system effectors

Type III secretion systems are used by many Gram-negative bacteria to inject type 3 effectors (T3Es) directly into eukaryotic cells, promoting disease or provoking immune response. Because of these opposing evolutionary forces, T3E repertoires often vary within taxonomic groups. Identifying the full...

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Bibliographic Details

Published in:	Bioinformatics (Oxford, England) Vol. 41; no. 5
Main Authors:	Wagner, Naama, Baumer, Ella, Lyubman, Iris, Shimony, Yair, Bracha, Noam, Martins, Leonor, Potnis, Neha, Chang, Jeff H, Teper, Doron, Koebnik, Ralf, Pupko, Tal
Format:	Journal Article
Language:	English
Published:	England Oxford University Press 06.05.2025
Subjects:	Algorithms Applications Note Bacterial Proteins - genetics Genome, Bacterial Genomics - methods Internet Machine Learning Software Type III Secretion Systems - genetics Xanthomonas - genetics
ISSN:	1367-4811, 1367-4803, 1367-4811
Online Access:	Get full text
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