Homology search with binary and trinary scoring matrices

Protein homology search can be accelerated with the use of bit-parallel algorithms in conjunction with constraints on the values contained in the scoring matrices. Trinary scoring matrices (containing only the values -1, 0, and 1) allow for significant acceleration without significant reduction in t...

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Bibliographic Details

Published in:	International journal of bioinformatics research and applications Vol. 2; no. 2; p. 119
Main Author:	Smith, Scott F
Format:	Journal Article
Language:	English
Published:	Switzerland 2006
Subjects:	Algorithms Computational Biology - methods Databases, Protein False Positive Reactions Models, Statistical Proteins - chemistry ROC Curve Sensitivity and Specificity Sequence Alignment Sequence Analysis Sequence Analysis, Protein Software
ISSN:	1744-5485
Online Access:	Get more information
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