Gillespie’s Stochastic Simulation Algorithm on MIC coprocessors

To investigate the behavior of biochemical systems, many runs of Gillespie’s Stochastic Simulation Algorithm (SSA) are generally needed, causing excessive computational costs on Central Processing Units (CPUs). Since all SSA runs are independent, the Intel Xeon Phi coprocessors based on the Many Int...

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Bibliographic Details
Published in:	The Journal of supercomputing Vol. 73; no. 2; pp. 676 - 686
Main Authors:	Tangherloni, Andrea, Nobile, Marco S., Cazzaniga, Paolo, Besozzi, Daniela, Mauri, Giancarlo
Format:	Journal Article
Language:	English
Published:	New York Springer US 01.02.2017 Springer Nature B.V
Subjects:	Central processing units Compilers Computer Science Computer simulation Coprocessors CPUs Graphics processing units Interpreters Processor Architectures Programming Languages Redesign Stochastic Simulation Algorithm High-Performance Computing Parallel computing Stochastic modeling GPU MIC
ISSN:	0920-8542, 1573-0484
Online Access:	Get full text
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