BigMPI4py: Python Module for Parallelization of Big Data Objects Discloses Germ Layer Specific DNA Demethylation Motifs

Parallelization in Python integrates Message Passing Interface via the mpi4py module. Since mpi4py does not support parallelization of objects greater than <inline-formula><tex-math notation="LaTeX">2^{31}</tex-math> <mml:math><mml:msup><mml:mn>2</mml...

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Bibliographic Details
Published in:	IEEE/ACM transactions on computational biology and bioinformatics Vol. 19; no. 3; pp. 1507 - 1522
Main Authors:	Ascension, Alex M., Arauzo-Bravo, Marcos J.
Format:	Journal Article
Language:	English
Published:	United States IEEE 01.05.2022 The Institute of Electrical and Electronics Engineers, Inc. (IEEE)
Subjects:	Big Data Bioinformatics Bisulfite Computational biology computational epigenomics CpG islands Demethylation Deoxyribonucleic acid DNA DNA - metabolism DNA Demethylation DNA methylation DNA Methylation - genetics DNA methylation motifs DNA methylation sequencing DNA sequencing Ectoderm Endoderm Genomes Genomics Germ Layers - metabolism high performance computing (HPC) Human tissues Humans Mesoderm Message passing message passing interface (MPI) Modules parallelization Python Sequence Analysis, DNA - methods Sequential analysis Syntactics Tissues whole genome bisulfite sequencing (WGBS) Workstations
ISSN:	1545-5963, 1557-9964, 1557-9964
Online Access:	Get full text
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