HDOT — An approach towards productive programming of hybrid applications
A wealth of important scientific and engineering applications are configured for use on high performance computing architectures using functionality found in the MPI specification. This specification provides application developers with a straightforward means for implementing their ideas for execut...
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| Veröffentlicht in: | Journal of parallel and distributed computing Jg. 137; S. 104 - 118 |
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| Hauptverfasser: | , , , , |
| Format: | Journal Article |
| Sprache: | Englisch |
| Veröffentlicht: |
Elsevier Inc
01.03.2020
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| Schlagworte: | |
| ISSN: | 0743-7315, 1096-0848 |
| Online-Zugang: | Volltext |
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| Zusammenfassung: | A wealth of important scientific and engineering applications are configured for use on high performance computing architectures using functionality found in the MPI specification. This specification provides application developers with a straightforward means for implementing their ideas for execution on distributed-memory parallel processing computers. OpenMP directives provide a means for operating on shared-memory regions of those computers. With the advent of machines composed of many-core processors, the strict synchronisation required by the bulk synchronous parallel (BSP) communication model can hinder performance increases. This is due to the complexity to handle load imbalances, to reduce serialisation imposed by blocking communication patterns, to overlap communication with computation and, finally, to deal with increasing memory overheads. The MPI specification provides advanced features such as non-blocking calls or shared memory to mitigate some of these factors. However, applying these features efficiently usually requires significant changes on the application structure.
Task parallel programming models are being developed as a means of mitigating the abovementioned issues but without requiring extensive changes on the application code. In this work, we present a methodology to develop hybrid applications based on tasks called hierarchical domain over-decomposition with tasking (HDOT). This methodology overcomes most of the issues found on MPI-only and traditional hybrid MPI+OpenMP applications. However, by emphasising the reuse of data partition schemes from process-level and applying them to task-level, it enables a natural coexistence between MPI and shared-memory programming models. The proposed methodology shows promising results in terms of programmability and performance measured on a set of applications.
•We present HDOT, a top-down approach for productive, hybrid programming.•We identify common patterns for data partitioning, distribution and reduction.•We examine its applicability on three applications. |
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| ISSN: | 0743-7315 1096-0848 |
| DOI: | 10.1016/j.jpdc.2019.11.003 |