pymzML—Python module for high-throughput bioinformatics on mass spectrometry data
pymzML is an extension to Python that offers (i) an easy access to mass spectrometry (MS) data that allows the rapid development of tools, (ii) a very fast parser for mzML data, the standard data format in MS and (iii) a set of functions to compare or handle spectra. Availability and implementation:...
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| Vydáno v: | Bioinformatics (Oxford, England) Ročník 28; číslo 7; s. 1052 - 1053 |
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| Hlavní autoři: | , , , , , |
| Médium: | Journal Article |
| Jazyk: | angličtina |
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Oxford
Oxford University Press
01.04.2012
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| ISSN: | 1367-4803, 1367-4811, 1367-4811 |
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| Abstract | pymzML is an extension to Python that offers (i) an easy access to mass spectrometry (MS) data that allows the rapid development of tools, (ii) a very fast parser for mzML data, the standard data format in MS and (iii) a set of functions to compare or handle spectra.
Availability and implementation: pymzML requires Python2.6.5+ and is fully compatible with Python3. The module is freely available on http://pymzml.github.com or pypi, is published under LGPL license and requires no additional modules to be installed.
Contact: christian@fufezan.net |
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| AbstractList | pymzML is an extension to Python that offers (i) an easy access to mass spectrometry (MS) data that allows the rapid development of tools, (ii) a very fast parser for mzML data, the standard data format in MS and (iii) a set of functions to compare or handle spectra.
Availability and implementation: pymzML requires Python2.6.5+ and is fully compatible with Python3. The module is freely available on http://pymzml.github.com or pypi, is published under LGPL license and requires no additional modules to be installed.
Contact: christian@fufezan.net pymzML is an extension to Python that offers (i) an easy access to mass spectrometry (MS) data that allows the rapid development of tools, (ii) a very fast parser for mzML data, the standard data format in MS and (iii) a set of functions to compare or handle spectra.SUMMARYpymzML is an extension to Python that offers (i) an easy access to mass spectrometry (MS) data that allows the rapid development of tools, (ii) a very fast parser for mzML data, the standard data format in MS and (iii) a set of functions to compare or handle spectra.pymzML requires Python2.6.5+ and is fully compatible with Python3. The module is freely available on http://pymzml.github.com or pypi, is published under LGPL license and requires no additional modules to be installed.AVAILABILITY AND IMPLEMENTATIONpymzML requires Python2.6.5+ and is fully compatible with Python3. The module is freely available on http://pymzml.github.com or pypi, is published under LGPL license and requires no additional modules to be installed.christian@fufezan.net.CONTACTchristian@fufezan.net. pymzML is an extension to Python that offers (i) an easy access to mass spectrometry (MS) data that allows the rapid development of tools, (ii) a very fast parser for mzML data, the standard data format in MS and (iii) a set of functions to compare or handle spectra. pymzML requires Python2.6.5+ and is fully compatible with Python3. The module is freely available on http://pymzml.github.com or pypi, is published under LGPL license and requires no additional modules to be installed. christian@fufezan.net. |
| Author | Barth, Johannes Hippler, Michael Niehues, Anna Bald, Till Fufezan, Christian Specht, Michael |
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| Cites_doi | 10.1093/bioinformatics/btn323 10.1186/1471-2105-9-163 10.1074/mcp.R110.000133 10.1038/nmeth0409-240 |
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| References | Martens (2023012512215025300_B3) 2011; 10 Askenazi (2023012512215025300_B1) 2009; 6 Sturm (2023012512215025300_B4) 2008; 9 Kessner (2023012512215025300_B2) 2008; 24 |
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| Title | pymzML—Python module for high-throughput bioinformatics on mass spectrometry data |
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