Energy landscape analysis for regulatory RNA finding using scalable distributed cyberinfrastructure

SUMMARY We investigate the folding energy landscape for a given RNA sequence through Boltzmann ensemble (BE) sampling of RNA secondary structures. The ensemble of sampled structures is used to derive distributions of energies and base‐pair distances between two configurations. We identify structural...

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Vydané v:	Concurrency and computation Ročník 23; číslo 17; s. 2292 - 2304
Hlavní autori:	Kim, Joohyun, Huang, Wei, Maddineni, Sharath, Aboul-ela, Fareed, Jha, Shantenu
Médium:	Journal Article
Jazyk:	English
Vydavateľské údaje:	Chichester, UK John Wiley & Sons, Ltd 10.12.2011
Predmet:	concurrent programming and distributed computing ncRNA gene finding Pilot-Job abstraction RNA folding energy landscape Simple API for Grid Applications (SAGA)
ISSN:	1532-0626, 1532-0634, 1532-0634
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