Parallelizing and optimizing a bioinformatics pairwise sequence alignment algorithm for many-core architecture

► MC64-NW/SW is a very efficient implementation of Smith–Waterman. ► MC64-NW/SW is the fastest pairwise aligner for long sequences in a standalone PC. ► MC64-NW/SW is based on Tile64 many-core SoC technology. ► Many-core SoC programs require fine-tuning to achieve a first-rate performance. ► Many-co...

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Bibliographic Details
Published in:	Parallel computing Vol. 37; no. 4; pp. 244 - 259
Main Authors:	Díaz, David, Esteban, Francisco José, Hernández, Pilar, Caballero, Juan Antonio, Dorado, Gabriel, Gálvez, Sergio
Format:	Journal Article
Language:	English
Published:	Elsevier B.V 01.04.2011
Subjects:	Algorithms Alignment Architecture Bioinformatics Chip multiprocessor architecture Computation Computer programs High performance optimization Multi-core parallelization Multithreading Needleman–Wunsch Optimization Parallel processing Smith–Waterman System-on-chip Tile64 processor Smith–Waterman High performance optimization Multithreading Chip multiprocessor architecture Tile64 processor System-on-chip Needleman–Wunsch Multi-core parallelization
ISSN:	0167-8191, 1872-7336
Online Access:	Get full text
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