A new class of highly efficient exact stochastic simulation algorithms for chemical reaction networks

We introduce an alternative formulation of the exact stochastic simulation algorithm (SSA) for sampling trajectories of the chemical master equation for a well-stirred system of coupled chemical reactions. Our formulation is based on factored-out, partial reaction propensities. This novel exact SSA,...

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Veröffentlicht in:	The Journal of chemical physics Jg. 130; H. 24; S. 244104
Hauptverfasser:	Ramaswamy, Rajesh, González-Segredo, Nélido, Sbalzarini, Ivo F
Format:	Journal Article
Sprache:	Englisch
Veröffentlicht:	United States 28.06.2009
Schlagworte:	Algorithms Colloids - chemistry Computer Simulation Escherichia coli - genetics Escherichia coli - metabolism Escherichia coli Proteins - genetics Escherichia coli Proteins - metabolism Heat-Shock Proteins - genetics Heat-Shock Proteins - metabolism Models, Biological Models, Chemical Stochastic Processes
ISSN:	1089-7690
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