R-leaping: accelerating the stochastic simulation algorithm by reaction leaps

A novel algorithm is proposed for the acceleration of the exact stochastic simulation algorithm by a predefined number of reaction firings (R-leaping) that may occur across several reaction channels. In the present approach, the numbers of reaction firings are correlated binomial distributions and t...

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Bibliographic Details
Published in:The Journal of chemical physics Vol. 125; no. 8; p. 084103
Main Authors: Auger, Anne, Chatelain, Philippe, Koumoutsakos, Petros
Format: Journal Article
Language:English
Published: United States 28.08.2006
ISSN:0021-9606
Online Access:Get more information
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