PVGwfa: a multi-level parallel sequence-to-graph alignment algorithm

A pangenome graph represents the genomes of multiple individuals, offering a comprehensive reference and overcoming allele bias from linear reference genomes. Sequence-to-graph alignment, crucial for pangenome tasks, aligns sequences to a graph to find the best matches. However, existing algorithms...

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Vydané v:	The Journal of supercomputing Ročník 81; číslo 5; s. 743
Hlavní autori:	Peng, Chenchen, Xia, Zeyu, Tang, Shengbo, Guo, Yifei, Yang, Canqun, Tang, Tao, Cui, Yingbo
Médium:	Journal Article
Jazyk:	English
Vydavateľské údaje:	New York Springer Nature B.V 15.04.2025
Predmet:	Algorithms Alignment Datasets Dynamic programming Efficiency Genomes Graphs Optimization Parallel processing Source code
ISSN:	1573-0484, 0920-8542, 1573-0484
On-line prístup:	Získať plný text
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