Toward Interlanguage Parallel Scripting for Distributed-Memory Scientific Computing

Scripting languages such as Python and R have been widely adopted as tools for the productive development of scientific software because of the power and expressiveness of the languages and available libraries. However, deploying scripted applications on large-scale parallel computer systems such as...

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Bibliographic Details
Published in:arXiv.org
Main Authors: Wozniak, Justin M, Armstrong, Timothy G, Maheshwari, Ketan C, Katz, Daniel S, Wilde, Michael, Foster, Ian T
Format: Paper
Language:English
Published: Ithaca Cornell University Library, arXiv.org 06.07.2021
Subjects:
Distributed memory
Interoperability
Interpreters
Libraries
Parallel computers
Programming languages
Supercomputers
ISSN:2331-8422
Online Access:Get full text
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Summary:Scripting languages such as Python and R have been widely adopted as tools for the productive development of scientific software because of the power and expressiveness of the languages and available libraries. However, deploying scripted applications on large-scale parallel computer systems such as the IBM Blue Gene/Q or Cray XE6 is a challenge because of issues including operating system limitations, interoperability challenges, parallel filesystem overheads due to the small file system accesses common in scripted approaches, and other issues. We present here a new approach to these problems in which the Swift scripting system is used to integrate high-level scripts written in Python, R, and Tcl, with native code developed in C, C++, and Fortran, by linking Swift to the library interfaces to the script interpreters. In this approach, Swift handles data management, movement, and marshaling among distributed-memory processes without direct user manipulation of low-level communication libraries such as MPI. We present a technique to efficiently launch scripted applications on large-scale supercomputers using a hierarchical programming model.
Bibliography:SourceType-Working Papers-1
ObjectType-Working Paper/Pre-Print-1
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ISSN:2331-8422
DOI:10.48550/arxiv.2107.02841