Computational Chemistry Data Management Platform Based on the Semantic Web

This paper presents a formal data publishing platform for computational chemistry using semantic web technologies. This platform encapsulates computational chemistry data from a variety of packages in an Extensible Markup Language (XML) file called CSX (Common Standard for eXchange). On the basis of...

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Vydáno v:The journal of physical chemistry. A, Molecules, spectroscopy, kinetics, environment, & general theory Ročník 121; číslo 1; s. 298
Hlavní autoři: Wang, Bing, Dobosh, Paul A, Chalk, Stuart, Sopek, Mirek, Ostlund, Neil S
Médium: Journal Article
Jazyk:angličtina
Vydáno: United States 12.01.2017
ISSN:1520-5215, 1520-5215
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Shrnutí:This paper presents a formal data publishing platform for computational chemistry using semantic web technologies. This platform encapsulates computational chemistry data from a variety of packages in an Extensible Markup Language (XML) file called CSX (Common Standard for eXchange). On the basis of a Gainesville Core (GC) ontology for computational chemistry, a CSX XML file is converted into the JavaScript Object Notation for Linked Data (JSON-LD) format using an XML Stylesheet Language Transformation (XSLT) file. Ultimately the JSON-LD file is converted to subject-predicate-object triples in a Turtle (TTL) file and published on the web portal. By leveraging semantic web technologies, we are able to place computational chemistry data onto web portals as a component of a Giant Global Graph (GGG) such that computer agents, as well as individual chemists, can access the data.
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ISSN:1520-5215
1520-5215
DOI:10.1021/acs.jpca.6b10489