BLESS: Bandwidth and Locality Enhanced SMEM Seeding Acceleration for DNA Sequencing

In an era marked by the pervasive spread of harmful viruses like COVID-19, the importance of DNA sequencing has grown significantly, given its crucial role in devising effective countermeasures. The seeding process, which aims to find locations of super-maximal exact matches (SMEM) between the DNA s...

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Bibliographic Details

Published in:	2024 ACM/IEEE 51st Annual International Symposium on Computer Architecture (ISCA) pp. 582 - 596
Main Authors:	Han, Seunghee, Moon, Seungjae, Suh, Teokkyu, Heo, JaeHoon, Kim, Joo-Young
Format:	Conference Proceeding
Language:	English
Published:	IEEE 29.06.2024
Subjects:	Bandwidth Data Locality DNA DNA Sequencing Genomics Hardware Accelerator Memory management Read Alignment Runtime Sequential analysis SMEM Seeding Software-Hardware Co-design Switches System performance
Online Access:	Get full text
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