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A Genome Resource for 192 Verticillium dahliae Isolates Infecting Potatoes Across Canada

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Název: A Genome Resource for 192 Verticillium dahliae Isolates Infecting Potatoes Across Canada
Autoři: Tanya Arseneault, Joël Lafond-Lapalme, Chary Esteban Quinche Gonzalez, Katerina S. Jordan, Dmytro Yevtushenko, Ryan Barrett, Hervé Van der Heyden, Dahu Chen, Mario Tenuta, Benjamin Mimee
Zdroj: PhytoFrontiers, Vol 3, Iss 3, Pp 753-757 (2023)
Informace o vydavateli: Scientific Societies, 2023.
Rok vydání: 2023
Témata: Potatoes--Diseases and pests--Canada, 2. Zero hunger, 0301 basic medicine, Whole-genome sequencing, 0303 health sciences, population genomics, variant calling, Minimum spanning network, Botany, Plant culture, 15. Life on land, phylogeny, SB1-1110, Verticillium dahliae, 03 medical and health sciences, minimum spanning network, whole-genome sequencing, QK1-989, Variant calling, Metagenomics, Soilborne plant pathogens, Potato production, Population genomics, Phylogeny
Popis: Verticillium dahliae is an important soilborne pathogen causing Verticillium wilt. It is also the primary causal agent of potato early dying, a disease complex involving the root-lesion nematode. Here, we report the whole-genome sequencing of 192 isolates of V. dahliae originating from the major potato production areas across Canada. Our results yielded a resource of 277,010 genetic variations that will be useful for genetic analyses and revealed the presence of two major lineages, both present in all provinces but exhibiting differences in regional prevalence. [Formula: see text] Copyright © 2023 His Majesty the King in Right of Canada, as represented by the Minister of Agriculture and Agri-Food Canada. This is an open access article distributed under the CC BY-NC-ND 4.0 International license .
Druh dokumentu: Article
Popis souboru: application/pdf
Jazyk: English
ISSN: 2690-5442
DOI: 10.1094/phytofr-03-23-0041-a
Přístupová URL adresa: https://doaj.org/article/fb02b46ab0604af0946356955bcd5dd5
Přístupové číslo: edsair.doi.dedup.....8ec56c213825242775c9fafd50e29061
Databáze: OpenAIRE
Popis
Abstrakt:Verticillium dahliae is an important soilborne pathogen causing Verticillium wilt. It is also the primary causal agent of potato early dying, a disease complex involving the root-lesion nematode. Here, we report the whole-genome sequencing of 192 isolates of V. dahliae originating from the major potato production areas across Canada. Our results yielded a resource of 277,010 genetic variations that will be useful for genetic analyses and revealed the presence of two major lineages, both present in all provinces but exhibiting differences in regional prevalence. [Formula: see text] Copyright © 2023 His Majesty the King in Right of Canada, as represented by the Minister of Agriculture and Agri-Food Canada. This is an open access article distributed under the CC BY-NC-ND 4.0 International license .
ISSN:26905442
DOI:10.1094/phytofr-03-23-0041-a